PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002273.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 583aa    MW: 63078.3 Da    PI: 9.132
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002273.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.94.3e-24211255145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e 
  FANhyb_rscf00002273.1.g00001.1 211 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHINRGRHRSRKPVEG 255
                                     79****************************************985 PP
2QLQ62.61.1e-21143179137
                             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                     ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  FANhyb_rscf00002273.1.g00001.1 143 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 179
                                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-13143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.91144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.4E-16144177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.54211255IPR014977WRC domain
PfamPF088793.0E-20212254IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDFGVVSLDG FGGSDIGFGF VASSDQEGKN KRYGSGFQKQ ERSGTVDEEQ HWRSSKQAKS  60
SDDFSAPKKM LQLNTGLMRT NSTSFDGQQL LSFSSSPKSE AQNASLPSYF QQAVSAYHRN  120
SGINNSGSLN GATVHWTIAG GRGPFTPSQW MELEHQALIY KYITANVPIP SNLLIPIKKA  180
LDSAGLFSPG LLRSNAFGWG SIHLGYANNT DPEPGRCRRT DGKKWRCWRD AVPDQKYCER  240
HINRGRHRSR KPVEGQTGQS VAGTATPAPS KQVMPGGGGI SSLAIANQQL KSLQPAIAAS  300
NSSAATQMSR MFMNKDSASE RMQHSPDLSM LSKENTLLNQ KQQLGFGESS RSEFGLVTSD  360
ALLNPSQKRS LSSMMSCGNY GGASQNLTVQ ETDSQHPLRH FIDDWPKNPS DRPAVVAWPD  420
QLDMQSARTQ LSISIPKAAS SDFIPSTSST NNEKLTLSPL RMSHELDTVP MGLGVSSSME  480
QHKKQANWIP ITWEPSLGGP LGEVLHHTNI KAAECKKSSV LNLMTEGWDN NSPSSLGSSP  540
TGVLQRTAFG SVSSSAGSSP RAENRSAHEG ASHCNELLMF PAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292769.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLA0A2P6Q1170.0A0A2P6Q117_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004292769.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-89growth-regulating factor 1