PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002210.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 773aa    MW: 86354.9 Da    PI: 7.5466
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002210.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.4e-15403452355
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  FANhyb_rscf00002210.1.g00001.1 403 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 452
                                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-10241368No hitNo description
SMARTSM003801.7E-16242372IPR001471AP2/ERF domain
PROSITE profilePS5103214.644242366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-11242264IPR001471AP2/ERF domain
PRINTSPR003672.2E-5243254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-11330367IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-7333368IPR016177DNA-binding domain
PRINTSPR003672.2E-5348368IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-17401461IPR016177DNA-binding domain
CDDcd000181.96E-10401460No hitNo description
SMARTSM003803.3E-30402466IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-18402460IPR001471AP2/ERF domain
PROSITE profilePS5103219.269402460IPR001471AP2/ERF domain
PfamPF008471.2E-9403452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAPATNWLSF SLMSPMEMLR SASESESPFA QAYDTSAATV PSPQYYLDNF YTNGWTNPKA  60
EVFYTEGEEE QTKLASFIDP QTQNQPIPKL EDFLGDSLVR YADSQTETQD SSLTQIYDQG  120
SAYFGDQQHH NQDLKAITGF QAFSANSGSE VEDSASMART TQLACAEFTG HSVESIGNEL  180
GFSSCGGSAA AGATTNTSNA LSLGVANTTA NTQSSNREKA IVAVETDSTK KISDTFGQRT  240
SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVLCCL VFVHWPELNR LLDSGFVKSQ  300
DWKPHPEFAE TSMKHGLVKT WLLLFLLLSS LQQVLRGGYD MEDKAARAYD LAALKYWGPT  360
ATTNFPISTY SKELEDMKLV TKQEFIASLR RKSSGFSRGA SMYRGVTRHH QQGRWQARIG  420
RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVEAIS KSSLPVGSSA  480
KRLKISLESE EQKSSVNNRD LHQQQNSQCS SGSNSNTINF ANSMAQPIQT IPCGIPYDHA  540
AAFYHHNLLQ QFQSYNYYGT TSDSSAVSQP NIATSQMTMA MMPQQQEQQQ PAEFFLWPQT  600
RTRENQGKMV FCLEAKVMDR VGRKLDFVFK NMDEKSYLQH HLRCHFLKKM ASFRSLRADD  660
RKPRFIMGML CKGQNHKTMR WAITVWMGFG LFKSLGCSSR DISVSHKESV CGVVSTNFFL  720
LLFCNRVEPG AVFSCQKVFG VLGDSSVLGD VFVSPEVSIH GDGRVDACRP SLP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468677.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_011468682.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU27e-86AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N83e-86AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLW9T1160.0W9T116_9ROSA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010113448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-168AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  4. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  5. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  6. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]