PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002184.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 548aa MW: 60314.9 Da PI: 9.3329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002184.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.3e-06	415	453	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L FANhyb_rscf00002184.1.g00002.1 415 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 453 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.9	404	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-7	414	458	No hit	No description
SuperFamily	SSF47459	1.31E-11	414	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0037	415	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-9	418	461	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MADEYQNTGN WWDSTSRNRF ETGASPPSSS LNSLGSFGWQ PDMIEMKSRS SMDSGSVSGT 60 SSIVFHDPQK LQGSDSSSGG DPSLHMMGLG LNSQATDWNQ AIFRGEKAET SFRSILQDNM 120 NSNANFQQET HDQQQLQWRD KLFTGSSGEM SRGFSLDQTQ FSPQYSSGES TVTCQGLSTS 180 FQMDSAALYG TSPSTILQGL LGSPHDHNQP QPPSPSIVFP YQASYGINST ELLPSWSNKV 240 PQFLRTSPPK HPANSHSHLQ FSNNAAFWNA PHEAAMKDVR PTFFPSFQPQ FPTARFDEKP 300 KNISEVHQDS GAVVKKSGSE ASKRPRNETS STLPAFKFSN NAAFWNAPHE AAMKDVRPTF 360 FPSLQPQFPT ACFDKKPKSI SEVHQDSGAV VKKSGSEASK RPRNETSSTL PAFKVRKEKM 420 GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVSVL SNPYMKSGAA IQHQQKSDKS 480 KDPEGPKHDL RGRGLCLVPV SSTFPAAHET TVNVSYQTLA KLGMIRSVGS YRNAYMSVRS 540 GPGWKKRE

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MADEYQNTGN WWDSTSRNRF ETGASPPSSS LNSLGSFGWQ PDMIEMKSRS SMDSGSVSGT  60
SSIVFHDPQK LQGSDSSSGG DPSLHMMGLG LNSQATDWNQ AIFRGEKAET SFRSILQDNM  120
NSNANFQQET HDQQQLQWRD KLFTGSSGEM SRGFSLDQTQ FSPQYSSGES TVTCQGLSTS  180
FQMDSAALYG TSPSTILQGL LGSPHDHNQP QPPSPSIVFP YQASYGINST ELLPSWSNKV  240
PQFLRTSPPK HPANSHSHLQ FSNNAAFWNA PHEAAMKDVR PTFFPSFQPQ FPTARFDEKP  300
KNISEVHQDS GAVVKKSGSE ASKRPRNETS STLPAFKFSN NAAFWNAPHE AAMKDVRPTF  360
FPSLQPQFPT ACFDKKPKSI SEVHQDSGAV VKKSGSEASK RPRNETSSTL PAFKVRKEKM  420
GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVSVL SNPYMKSGAA IQHQQKSDKS  480
KDPEGPKHDL RGRGLCLVPV SSTFPAAHET TVNVSYQTLA KLGMIRSVGS YRNAYMSVRS  540
GPGWKKRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024198549.1	0.0	transcription factor bHLH123-like
Swissprot	Q8GXT3	1e-58	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2P6QBL1	0.0	A0A2P6QBL1_ROSCH; Putative transcription factor bHLH family
STRING	XP_004294314.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]