PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002107.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 365aa MW: 40813.5 Da PI: 4.3268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002107.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.1e-12	199	242	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L FANhyb_rscf00002107.1.g00002.1 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 242 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	196	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-14	200	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-9	200	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.79E-5	200	246	No hit	No description
CDD	cd04873	0.00682	292	355	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MELTQLGFLE ELLAPIRRES WNTYSSGFNE FFPMNNGWSF DSNFEENPAL VSSSNPQFGG 60 FSTQAESTFE CPLLTEQQGS SFPFVDGGGV LTVPAEIDSS YTNNNDSNTP PFPPQDQDYP 120 STVEDEEFGN FLGSENQSSC LEMEESKNST CKVEMEQQGI AITSDHGDIP VAFNMGLCGG 180 KRNCSSKSKK IEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK 240 ELLERINKLQ EEKIEENTNQ ISFLGINKDL NSSEVLVRNS PKFDVERRDM DTRIDICCAA 300 KPGLLLSTVS TIEALGLEIQ QCVISCFNDF SLQASCSEDA EQRTMINSEE IKQALFRNAG 360 YGGRC

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MELTQLGFLE ELLAPIRRES WNTYSSGFNE FFPMNNGWSF DSNFEENPAL VSSSNPQFGG  60
FSTQAESTFE CPLLTEQQGS SFPFVDGGGV LTVPAEIDSS YTNNNDSNTP PFPPQDQDYP  120
STVEDEEFGN FLGSENQSSC LEMEESKNST CKVEMEQQGI AITSDHGDIP VAFNMGLCGG  180
KRNCSSKSKK IEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK  240
ELLERINKLQ EEKIEENTNQ ISFLGINKDL NSSEVLVRNS PKFDVERRDM DTRIDICCAA  300
KPGLLLSTVS TIEALGLEIQ QCVISCFNDF SLQASCSEDA EQRTMINSEE IKQALFRNAG  360
YGGRC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	208	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288312.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-92	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A2P6RPK1	0.0	A0A2P6RPK1_ROSCH; Putative transcription factor bHLH family
STRING	XP_004288312.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-94	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]