PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001606.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 473aa MW: 53741.3 Da PI: 6.4511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001606.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	289	334	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR+ri+++ + Lr l+Pk +K++ a+i A+eYI++Lq FANhyb_rscf00001606.1.g00002.1 289 NLNAERKRRNRIKEGEFALRALVPKI-----TKMDRASIPADAIEYIQELQ 334 5568*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.1E-14	14	161	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	1.98E-11	282	338	No hit	No description
SuperFamily	SSF47459	1.7E-14	283	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.018	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	287	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-11	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-14	290	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MAMSLKRLER LMEEWLRPLV EAKQWDYCVV WKLGHDPTRF IEMVGCCCGG GYDYCANVKE 60 EEGAQVCRDG YLEHRIMTKA CVALAQLPDS MPLYSGVHTE VIISDQPRWI SNALDSNHPE 120 SHDSKGTRVL IPLLLSGLIE LFTTDNLPEN QEMLDLLMES FNANVNLKGS ASLDELHIDP 180 MKEKLLQNWF HFPNLPKVCP RPQLTSRTQS TSCPSREGSS SGSNPSTEHR PFNLSSDQLP 240 PYGYVMPSEK SSRFRKPKCR DNLLKQQVVE KDNARGVGRT GSEHFRSKNL NAERKRRNRI 300 KEGEFALRAL VPKITKMDRA SIPADAIEYI QELQQQVKEL EEELREMEEE DSANNEVDLH 360 VSALDKNKGG SSSLTCTDHK QISSIALKIS TEVHLEVYQL SKKECLIKLF CEHNRGGFTR 420 LIETMDCLGL EVVDANVTTF DRNSLIILRV EANEDIQAKK LKDLLIKLTR GRN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MAMSLKRLER LMEEWLRPLV EAKQWDYCVV WKLGHDPTRF IEMVGCCCGG GYDYCANVKE  60
EEGAQVCRDG YLEHRIMTKA CVALAQLPDS MPLYSGVHTE VIISDQPRWI SNALDSNHPE  120
SHDSKGTRVL IPLLLSGLIE LFTTDNLPEN QEMLDLLMES FNANVNLKGS ASLDELHIDP  180
MKEKLLQNWF HFPNLPKVCP RPQLTSRTQS TSCPSREGSS SGSNPSTEHR PFNLSSDQLP  240
PYGYVMPSEK SSRFRKPKCR DNLLKQQVVE KDNARGVGRT GSEHFRSKNL NAERKRRNRI  300
KEGEFALRAL VPKITKMDRA SIPADAIEYI QELQQQVKEL EEELREMEEE DSANNEVDLH  360
VSALDKNKGG SSSLTCTDHK QISSIALKIS TEVHLEVYQL SKKECLIKLF CEHNRGGFTR  420
LIETMDCLGL EVVDANVTTF DRNSLIILRV EANEDIQAKK LKDLLIKLTR GRN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298568.2	0.0	PREDICTED: transcription factor bHLH90
TrEMBL	A0A2P6R406	0.0	A0A2P6R406_ROSCH; Putative transcription factor bHLH family
STRING	XP_004298568.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-36	bHLH family protein