PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001490.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 457aa    MW: 49795 Da    PI: 9.4877
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001490.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.93.5e-23129174146
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                                     d+epgrCrRtDGKkWRC+r+v++ +k+C++H+hrgr+rsrk++e+s
  FANhyb_rscf00001490.1.g00002.1 129 DPEPGRCRRTDGKKWRCRRDVVPYEKYCQKHIHRGRQRSRKPVEPS 174
                                     79****************************************9975 PP
2WRC69.25e-22345385242
                             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                                      epgrCrRtDGKkWRC+++vl+++k+C+rH+hrg ++ r+s
  FANhyb_rscf00001490.1.g00002.1 345 LEPGRCRRTDGKKWRCKSNVLPNQKYCDRHIHRGVKQMRTS 385
                                     59********************************9998887 PP
3QLQ45.62.2e-164984237
                             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                     FTaaQl++L++Q  +y+y+aa++P P +L+++i+k
  FANhyb_rscf00001490.1.g00002.1 49 EFTAAQLNELEQQRVIYQYIAAGLPAPFQLVLPIWK 84
                                    5*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.1E-84884IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.034984IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-95083IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.706129173IPR014977WRC domain
PfamPF088796.6E-19130172IPR014977WRC domain
PROSITE profilePS5166721.565344390IPR014977WRC domain
PfamPF088794.5E-18346385IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEGTQIVKVK HEVIEVGSDD EEESSSSAPS IKLGLAVGGG EVGKRRRSEF TAAQLNELEQ  60
QRVIYQYIAA GLPAPFQLVL PIWKSVAGAS FSNAAVYQQY PSYCHVNLYL MTAFVVVRYG  120
GFDYRDKMDP EPGRCRRTDG KKWRCRRDVV PYEKYCQKHI HRGRQRSRKP VEPSEVTPPP  180
STTLLKNSGG ELLNSKKNIQ IQTQKGLLLM AQPSNSISVF HSPTTSSGYH ELAKNSSTVA  240
YTTSTPSYIT ATTPAAASPS TTAGQMPVTT SASIDNNILI GAKDNGYSYH ANNYGIIRGS  300
RNTINVGSNI APGLGFSPKS VLQAGHMTLV SCNGLYIDNG SGEELEPGRC RRTDGKKWRC  360
KSNVLPNQKY CDRHIHRGVK QMRTSSPVAT ASTSASAMNS TRPSQITGIA EEIPSTNLTM  420
SIPARSPLMQ NDEKSNSSSD SDATITDTSL AAYEQLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306901.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A2P6SG610.0A0A2P6SG61_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004306901.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.17e-42growth-regulating factor 9