PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001420.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 579aa    MW: 65876 Da    PI: 6.817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001420.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.16.7e-30127212187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ ++
  FANhyb_rscf00001420.1.g00003.1 127 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKH 203
                                     8***********************************998*******************************98..55667 PP

                        trihelix  79 cpyfdqlea 87 
                                     +++f+qlea
  FANhyb_rscf00001420.1.g00003.1 204 YRFFRQLEA 212
                                     *******85 PP
2trihelix507.6e-16420493271
                        trihelix   2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                     W++ e+  L+++r +me+r+++    g++++ lWee+++km+  g+ers   Ckekwe++n   k  ke  +k+
  FANhyb_rscf00001420.1.g00003.1 420 WPECEINRLVQLRGSMESRFSTnqrgGCSDEILWEEIASKMSCLGYERSGMVCKEKWESINYGNKCSKELFSKK 493
                                     *********************8444458********************************98777777665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.057124187IPR001005SANT/Myb domain
PROSITE profilePS500906.98126185IPR017877Myb-like domain
PfamPF138374.1E-20127213No hitNo description
CDDcd122039.68E-20127192No hitNo description
SMARTSM007173.2416482IPR001005SANT/Myb domain
PfamPF138374.1E-10418491No hitNo description
CDDcd122037.57E-20418487No hitNo description
PROSITE profilePS500906.214420480IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEMEDQYNLG YLRQLMNGTG RSHFPTIQNP AELFPSSHHH RPQLLAPAHH QHHHHQQHPY  60
EIMMMGRLPT AHDMMPHGIH EFRSADSAGG GGACTNNTVA ATSCLSGGGG LEVEGGGCLG  120
GDGGSGRWPR QETLTLLEIR SRLDHKFKEA NQKGPLWDEV SRIMCEEHGY QRSGKKCREK  180
FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNN IAASSLPPDR SHFVGNNNIN  240
NNNNNNSFRY QAQPSHQDTT TAATYQSTQS VSNSSDFEDS SSSEDNGASA IAPMDDDVLE  300
MKRMRKRRGW KVKIKEFIDV QMRKMMEKQD EWLEKLTSTL EQKERERVLR EEEWRKQEAG  360
RAEREQQFWA KERAWIESRD KALMDALQKL TGSSTSHEVK TSSSTPEQDH EDIVSEQRTW  420
PECEINRLVQ LRGSMESRFS TNQRGGCSDE ILWEEIASKM SCLGYERSGM VCKEKWESIN  480
YGNKCSKELF SKKRKENNLS RPTSCYFGNN ESNSSMYNSQ GGVYATCEMN NHERVDDGSP  540
PANPNVGNAA VVNETCFPFL MGEGDNLWEN YGLKLSKGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305362.10.0PREDICTED: trihelix transcription factor PTL
TrEMBLA0A2H4NFW70.0A0A2H4NFW7_FRAAN; Trihelix transcription factor GT-2D
STRINGXP_004305362.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-115Trihelix family protein