PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001078.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ARF | ||||||||
Protein Properties | Length: 820aa MW: 91092.2 Da PI: 6.682 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 3.9e-23 | 168 | 269 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++ FANhyb_rscf00001078.1.g00001.1 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKN 245 99****************************963.3445679************************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L +gD v+F + +++el+++++r+ FANhyb_rscf00001078.1.g00001.1 246 LVSGDAVLFL--RGENGELRLGIRRA 269 **********..4499999****996 PP | |||||||
2 | Auxin_resp | 118.5 | 5.6e-39 | 295 | 375 | 2 | 82 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 a+a+stks+F+v+Y+Pras++eFv++++k+ +++ ++v++G+Rfkm+++ +ds+err+sG+v+g+sdldp+rWpnSkWr FANhyb_rscf00001078.1.g00001.1 295 ANAVSTKSMFHVFYSPRASHAEFVIPYQKYIRSIANPVTMGTRFKMRLDRDDSPERRCSGVVTGISDLDPYRWPNSKWR 373 799**************************************************************************** PP Auxin_resp 81 sL 82 +L FANhyb_rscf00001078.1.g00001.1 374 CL 375 *9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-40 | 161 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-44 | 162 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.52E-22 | 166 | 268 | No hit | No description |
SMART | SM01019 | 2.2E-23 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-21 | 168 | 269 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-33 | 295 | 375 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 7.19E-10 | 676 | 757 | No hit | No description |
PROSITE profile | PS51745 | 22.127 | 678 | 762 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MEFDLNHAVV GDVVEKNAYC NGDCDKGGCA HCLSSSTSSC SSNSSSPPVV SSMYLELWHA 60 CAGPLISLPK KGNVVVYFPQ GHLEQVASSY PPLSSMDMPH FDLQPQIICK VVNVQLLANK 120 ENDEVYTHVT LLPQTELVGQ NLEGKELEEL GMDEGDGGSP TRSTPHMFCK TLTASDTSTH 180 GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF 240 ISQKNLVSGD AVLFLRGENG ELRLGIRRAV RPRNGLPDSV VGNQNSYSSV VSLIANAVST 300 KSMFHVFYSP RASHAEFVIP YQKYIRSIAN PVTMGTRFKM RLDRDDSPER RCSGVVTGIS 360 DLDPYRWPNS KWRCLMVRWD EDIGNDHQER VSLWEIDPSV SLPPLSIQSS PRLKKLRTSL 420 QAFPPNPSIP GRLLDWKLWV YGLEETVKSS KVLQGQENMG FISPHYGCDT LKSPVDFEMQ 480 PSAHQNLASH IMQKATIGEF MRAHRTSYTG FAESDRFPKV LQGQEICPLR SLSGKANFNL 540 GDWESNRGCT SFNSYQAPKP NLFTLGSESL LNMYFPYGDI HKVGQDPMTC SNTTNLAREN 600 IKANTYPVKM GVARNEVGRP KTLSEHWPQE ISSALPTSLT NVKSPKEVNA DGTTSGCKLF 660 GFSLSGETPT LSQSSSKRSC TKVHKQGSLV GRAIDLSKLN GYGDLLSELE RLFSMEGLLR 720 DPDKGWRILY TDSENDVMVV GDDPWHEFCD VVSKIHIYTQ EEVEKMTIGM ISDDTQSCLE 780 QAPPMLEVSK SSSVGQPDSS PTAIRVACMP ELMLLPVSGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-119 | 39 | 398 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-119 | 39 | 398 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309870.1 | 0.0 | PREDICTED: auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A385NIB6 | 0.0 | A0A385NIB6_FRAAN; Auxin response factor | ||||
STRING | XP_004309870.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |