PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000997.1.g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 325aa MW: 35341.3 Da PI: 7.5462 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00075 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H FANhyb_rscf00000997.1.g00005.1 115 YECKTCNRTFPSFQALGGHRASH 137 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 207 | 229 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H FANhyb_rscf00000997.1.g00005.1 207 HECSICGSEFSSGQALGGHMRRH 229 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.0E-13 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 114 | 137 | No hit | No description |
SMART | SM00355 | 0.052 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 202 | 229 | No hit | No description |
Pfam | PF13912 | 1.0E-11 | 207 | 231 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 207 | 229 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 207 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 209 | 229 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEGQEEVQAV LSDHQQSQMM IIKGKRTKRQ RPMSPFGLAV TSSSSSACGG GHGGEEYGNS 60 FTSASYESTE EEEDMANCLI LLAQGCDVVP KQQTSPVHEA TGVSGHVSKA GFYVYECKTC 120 NRTFPSFQAL GGHRASHKKP KSVAAAMADQ EKKPAPIHFT TSASMDQEVE DSKQFVKKSS 180 PPPPPSTQPA VPIQIKGFQS NNKAKIHECS ICGSEFSSGQ ALGGHMRRHR AIVANNNSIS 240 GAATTQVVGI GAAIDNNSTR SKQERSNILA LDLNLPAPED HDHHHHHHHH QQHQIHHQRD 300 SKFQFVPTQQ TSLVFNAPAL VDCHY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294532.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P6QGP9 | 1e-171 | A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004294532.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-51 | C2H2 family protein |