PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000997.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 325aa    MW: 35341.3 Da    PI: 7.5462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000997.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075115137123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     y+C+ C+++F++   L  H  +H
  FANhyb_rscf00000997.1.g00005.1 115 YECKTCNRTFPSFQALGGHRASH 137
                                     99**********99999998887 PP
2zf-C2H213.50.00021207229123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C++Cg  Fs+   L  H+r+H
  FANhyb_rscf00000997.1.g00005.1 207 HECSICGSEFSSGQALGGHMRRH 229
                                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-13114139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8114137No hitNo description
SMARTSM003550.052115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-8202229No hitNo description
PfamPF139121.0E-11207231IPR007087Zinc finger, C2H2
SMARTSM003550.02207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764207229IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEGQEEVQAV LSDHQQSQMM IIKGKRTKRQ RPMSPFGLAV TSSSSSACGG GHGGEEYGNS  60
FTSASYESTE EEEDMANCLI LLAQGCDVVP KQQTSPVHEA TGVSGHVSKA GFYVYECKTC  120
NRTFPSFQAL GGHRASHKKP KSVAAAMADQ EKKPAPIHFT TSASMDQEVE DSKQFVKKSS  180
PPPPPSTQPA VPIQIKGFQS NNKAKIHECS ICGSEFSSGQ ALGGHMRRHR AIVANNNSIS  240
GAATTQVVGI GAAIDNNSTR SKQERSNILA LDLNLPAPED HDHHHHHHHH QQHQIHHQRD  300
SKFQFVPTQQ TSLVFNAPAL VDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294532.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6QGP91e-171A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294532.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-51C2H2 family protein