PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000910.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 545aa MW: 60264.3 Da PI: 7.0095

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000910.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	240	281	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L FANhyb_rscf00000910.1.g00002.1 240 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 281 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-7	237	314	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	239	283	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.8E-8	240	282	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.42E-21	241	287	No hit	No description
SuperFamily	SSF57959	1.13E-6	241	283	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.3E-8	242	284	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-30	322	397	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MAFISATCPD SSFFLEYKDE NGLLRKSCMA ASHRVVGDTG LSDSGPSSSN HHVPYATVLH 60 GINAPSTSFL NQEGSTFDFG ELEEAIARQV RNDEAQAPLF TGRPAATLEM FPSWPMRYHQ 120 TPRGSSKSAG GDSTDSGSQV NTTTLTSKGD QTQLEPESPI SKIASSSNHH HHQHQALDQN 180 HLQFQQQQQL QQDMAISDTS RATTVATGAA EPSKGQSAPK PNHEKRKGAG STSENKQLDA 240 KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLTQLEQD LQRARAQGLL MGGCGGGFGN 300 ISSAAAIFDM EYARWLEDDH RHMSELRTGL QAHLSDNDLR IVVDGYISHY DEIFQLKGVA 360 AKSDVFHLIT GLWASQAERC FLWMGGFRPS DLIKMLTQQL DPITEQQVMG ICSLQHSSQQ 420 AEEALTQGLD QLHQSLIDTI AGGPVVDGMQ QMAVALGKLT NLEGFVRQAD NLRQQTLHQL 480 RRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRESMMS DDNSCQTTTD LQMVHQPSQN 540 HFSSF

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MAFISATCPD SSFFLEYKDE NGLLRKSCMA ASHRVVGDTG LSDSGPSSSN HHVPYATVLH  60
GINAPSTSFL NQEGSTFDFG ELEEAIARQV RNDEAQAPLF TGRPAATLEM FPSWPMRYHQ  120
TPRGSSKSAG GDSTDSGSQV NTTTLTSKGD QTQLEPESPI SKIASSSNHH HHQHQALDQN  180
HLQFQQQQQL QQDMAISDTS RATTVATGAA EPSKGQSAPK PNHEKRKGAG STSENKQLDA  240
KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLTQLEQD LQRARAQGLL MGGCGGGFGN  300
ISSAAAIFDM EYARWLEDDH RHMSELRTGL QAHLSDNDLR IVVDGYISHY DEIFQLKGVA  360
AKSDVFHLIT GLWASQAERC FLWMGGFRPS DLIKMLTQQL DPITEQQVMG ICSLQHSSQQ  420
AEEALTQGLD QLHQSLIDTI AGGPVVDGMQ QMAVALGKLT NLEGFVRQAD NLRQQTLHQL  480
RRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRESMMS DDNSCQTTTD LQMVHQPSQN  540
HFSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291604.1	0.0	PREDICTED: transcription factor TGA6 isoform X4
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2P6QDK2	0.0	A0A2P6QDK2_ROSCH; Putative transcription factor bZIP family
STRING	XP_004291604.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]