PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000706.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 468aa MW: 51199.6 Da PI: 6.5442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000706.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+Cg+ F++ ++ +H t+ FANhyb_rscf00000706.1.g00004.1 102 FDCPICGRAFRSEDEVSVHVDTC 124 77*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.556	102	131	IPR007087	Zinc finger, C2H2
SMART	SM00580	1.5E-13	157	221	IPR018997	PUB domain
Pfam	PF09409	4.3E-15	159	223	IPR018997	PUB domain
CDD	cd09212	4.89E-20	159	240	No hit	No description
SuperFamily	SSF143503	9.55E-17	159	222	IPR018997	PUB domain
SuperFamily	SSF54236	1.76E-12	322	435	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	2.4E-7	350	434	No hit	No description
Pfam	PF00789	2.3E-5	351	402	IPR001012	UBX domain
PROSITE profile	PS50033	10.819	351	435	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MDDMKDKVKG FIKNPFSSSS SAKFKGQGRV LGSSSSSGPA NSPILGRAAP SKPNPVSTSK 60 PPPQKPQPPA NPKPPSREGF DPFDALITPG KRSQNGFTLN VFDCPICGRA FRSEDEVSVH 120 VDTCVNSSDE NNSAEGVSGS VESQLEACVG AFASGSGNVE VVVRLLRNIV REPENVKFRK 180 VRMSNPKIRE AIGEVVGGVE LLECVGFELR EEEGEMWAVM EEVPNAERIG VMKKGIELLE 240 PPKVQEPERK EKLVSDGSGE LEEGVEPKKV DRQFSYCMVK RVVLCGNWHL TRVFFSVSES 300 LAAKIELPES FYSLSAMELK REAEARKKKI EDSQMLIPKS YREKQAKAAK KRYTKTVIRV 360 QFPDGVVLQG VFSPAEPTSA LYEYVSLALK EPCLEFELLN PVAIKRRVIP HSPAPGERPA 420 TLADEDLVPS ALVKFKPMET DTIVFTGLCN ELLQISEPLG NGSALGHA

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MDDMKDKVKG FIKNPFSSSS SAKFKGQGRV LGSSSSSGPA NSPILGRAAP SKPNPVSTSK  60
PPPQKPQPPA NPKPPSREGF DPFDALITPG KRSQNGFTLN VFDCPICGRA FRSEDEVSVH  120
VDTCVNSSDE NNSAEGVSGS VESQLEACVG AFASGSGNVE VVVRLLRNIV REPENVKFRK  180
VRMSNPKIRE AIGEVVGGVE LLECVGFELR EEEGEMWAVM EEVPNAERIG VMKKGIELLE  240
PPKVQEPERK EKLVSDGSGE LEEGVEPKKV DRQFSYCMVK RVVLCGNWHL TRVFFSVSES  300
LAAKIELPES FYSLSAMELK REAEARKKKI EDSQMLIPKS YREKQAKAAK KRYTKTVIRV  360
QFPDGVVLQG VFSPAEPTSA LYEYVSLALK EPCLEFELLN PVAIKRRVIP HSPAPGERPA  420
TLADEDLVPS ALVKFKPMET DTIVFTGLCN ELLQISEPLG NGSALGHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	1e-12	306	435	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297448.1	0.0	PREDICTED: UBX domain-containing protein 6
Swissprot	Q9ZU93	1e-164	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2P6R3W4	0.0	A0A2P6R3W4_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004297448.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]