PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000560.1.g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 12624.4 Da PI: 8.9192 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.6 | 3.7e-37 | 31 | 118 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r+da+ ++++eA+ar++dPvyG+v+ FANhyb_rscf00000560.1.g00004.1 31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPAHKRPDAVLTVCFEAQARLKDPVYGCVA 109 7***********************9989*************************************************** PP DUF260 79 vilklqqql 87 +i++lqqq+ FANhyb_rscf00000560.1.g00004.1 110 HIFALQQQY 118 *******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.176 | 30 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 31 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MNATTNPSGG CGGGGGSSSG GSAGGGGNAG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLHHI PAHKRPDAVL TVCFEAQARL KDPVYGCVAH IFALQQQYPI 120 SGKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 27 | 117 | 7 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 27 | 117 | 7 | 96 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306912.1 | 6e-80 | PREDICTED: LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 8e-53 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A2P6SG43 | 2e-61 | A0A2P6SG43_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004306912.1 | 2e-79 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 9e-55 | LBD family protein |
Publications ? help Back to Top | |||
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