PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000521.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 392aa    MW: 44909 Da    PI: 4.5128
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000521.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.5e-15158242286
                        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     Wt++e+ +L++a  ++  r ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk++    + t +++s++
  FANhyb_rscf00000521.1.g00007.1 158 WTEHETFVLLDAWGDRFLRRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERLKFAE-TGGATSKW 235
                                     *************************************762678**********************99998.688999** PP

                        trihelix  80 pyfdqle 86 
                                     +yf++++
  FANhyb_rscf00000521.1.g00007.1 236 VYFKKMD 242
                                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-21157244No hitNo description
PROSITE profilePS500906.319158215IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-4158222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDDTEDDARY PPNSYGGNHP QGYDSAHQPP KLAARGGSFS RPDSHYDDDE DEEDEELGEE  60
EGHNGQNGYP SVHKDVGDDD DDDDELGDDD EDDDDEEDDK GKVFKRVDDD DMQKHPKKRK  120
LKSLISSYEF APRIPAPSAP ALPAPRQSHG GRNALTDWTE HETFVLLDAW GDRFLRRGKK  180
SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK ERLKFAETGG ATSKWVYFKK  240
MDMLMSSPQQ QAGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPGNSES AEGVEDESDG  300
LPPKKRRFGR DTDERSSFRL LADSIQKFSD IYEKIEKSKR QKMVELEKMR MDFHRDLEME  360
KRQIMERAQA EIAKMRQAED EENDVSAENA SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119KHPKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024178741.10.0trihelix transcription factor ASIL2-like
RefseqXP_024178742.10.0trihelix transcription factor ASIL2-like
RefseqXP_024178743.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2P6RWQ20.0A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family
STRINGXP_004302915.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-76Trihelix family protein