PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000515.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 343aa MW: 39116.5 Da PI: 6.2304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000515.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	131	182	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P + + ++ + a+i A++++k+L+ FANhyb_rscf00000515.1.g00001.1 131 QRMTHIAVERNRRKQMNEYLSALRSIMPDS---YVQRGDQASIIGGAINFVKELE 182 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-13	129	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.44E-13	129	186	No hit	No description
SuperFamily	SSF47459	1.83E-16	130	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	130	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-10	136	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MALDADVVFP QDPFTYTTNK DLYNLLVGNW SYDGHENFHH HQQQLQEAAA SFDFLGNQTD 60 HHFTSYSTTP SMVTHFDDLQ LSNSNPDAPT DFDQYSQFQL PSVEYTGQTT TARPKRRRAR 120 SKKNKEEIEN QRMTHIAVER NRRKQMNEYL SALRSIMPDS YVQRGDQASI IGGAINFVKE 180 LENQVQFLGA QKPNRNSSDL PFSDFFSFPQ YSSSTRASTS TAHQTSHENR YDSDQMPSVE 240 HKYPADMNVK AAADIEVTMV ESHANLKVRS KRVPKQLLKF VSGLHTLRLT ILHLNVSTVD 300 EIVLYSLSVK VEEDCALTSV DEIATAVYQM LARIQEEAML HLN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MALDADVVFP QDPFTYTTNK DLYNLLVGNW SYDGHENFHH HQQQLQEAAA SFDFLGNQTD  60
HHFTSYSTTP SMVTHFDDLQ LSNSNPDAPT DFDQYSQFQL PSVEYTGQTT TARPKRRRAR  120
SKKNKEEIEN QRMTHIAVER NRRKQMNEYL SALRSIMPDS YVQRGDQASI IGGAINFVKE  180
LENQVQFLGA QKPNRNSSDL PFSDFFSFPQ YSSSTRASTS TAHQTSHENR YDSDQMPSVE  240
HKYPADMNVK AAADIEVTMV ESHANLKVRS KRVPKQLLKF VSGLHTLRLT ILHLNVSTVD  300
EIVLYSLSVK VEEDCALTSV DEIATAVYQM LARIQEEAML HLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	142	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302452.1	0.0	PREDICTED: transcription factor bHLH94-like
TrEMBL	A0A2P6R6R1	0.0	A0A2P6R6R1_ROSCH; Putative transcription factor bHLH family
STRING	XP_004302452.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-64	bHLH family protein