PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000372.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35564.4 Da PI: 8.3087 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 56 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ FANhyb_rscf00000372.1.g00001.1 56 RGHWRPAEDSKLKELVSLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 101 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.2e-18 | 108 | 151 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ FANhyb_rscf00000372.1.g00001.1 108 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 151 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.599 | 51 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 55 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-28 | 56 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 56 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 57 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.18E-13 | 59 | 100 | No hit | No description |
PROSITE profile | PS51294 | 26.929 | 103 | 157 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 107 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 108 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-11 | 110 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-21 | 110 | 156 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
STLGTRSAEE QLGHRNNNSD FRGGGKACSD SMSDDGTEEH NESMNHRNEQ SKQCARGHWR 60 PAEDSKLKEL VSLYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLM 120 QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRKLS QSVLRASSME 180 ENMNSTPPAI LPYSYLNNYG SSGNLNNMAC WEEAAIITSK KVPPFQFLPG TNDEIAQVSS 240 GNFYDHPPYM MNVMAMRQSN YYHALQSYSD STPASPSLVS AGAGKLTSSS SSAADDQERR 300 DIAASSFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 55 | 156 | 6 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298424.2 | 0.0 | PREDICTED: myb-like protein Q | ||||
TrEMBL | A0A2P6R2T6 | 0.0 | A0A2P6R2T6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004298424.1 | 1e-123 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26780.1 | 4e-78 | myb domain protein 117 |