PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000355.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 295aa    MW: 31768.7 Da    PI: 5.6542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000355.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-096302248
                                    T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                                    + W++Ia +++ +Rt++++k++w+++l
  FANhyb_rscf00000355.1.g00001.1  6 R-WSAIATHLP-KRTDNEIKNYWNTHL 30
                                    4.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.827134IPR017930Myb domain
SuperFamilySSF466895.46E-8538IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-13541IPR009057Homeodomain-like
CDDcd001672.74E-7630No hitNo description
PfamPF002493.6E-7630IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MIYAARWSAI ATHLPKRTDN EIKNYWNTHL KKRLAKMGID PVTHKPKNDA LLSAHDGQSK  60
NAANLSHMAQ WESARLEAEA RLVRESKLRS HNSLINQLTS AAAAAAVAAA STSSSSAHQL  120
LLMKGQSLDS PTSTLTTYNS ENVAQGIMPS SSMIEFVGCS GASSGDHHDQ TAAINAKEEG  180
DIQVQDWKLG FGNMPSSSTH FGLHDNVAWT SSNEQVHHDR GIGGVDEVAD QEGFTNLLLN  240
NSVDRDQSMS DGGGGCDSEN GGSAGSDYYE DNKNYWNSIL NLVNSSPSHD DSPIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304285.10.0PREDICTED: protein ODORANT1
TrEMBLA0A2P6S4C81e-175A0A2P6S4C8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304285.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-50myb domain protein 16