PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000174.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 582aa MW: 62345.5 Da PI: 8.2658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000174.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H FANhyb_rscf00000174.1.g00005.1 83 FICEVCNKGFQREQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	13.1	0.00028	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ FANhyb_rscf00000174.1.g00005.1 159 WKCEKCSKRYAVQSDWKAHSKTC 181 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-6	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.26E-7	82	105	No hit	No description
SMART	SM00355	0.0052	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.9E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	124	154	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.0E-5	147	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.26E-7	154	179	No hit	No description
SMART	SM00355	130	159	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MAAAGAIANQ DISKDKAIFV RVSGKDKNYW YVIEEKSAID FDDGSTMIGC ESDNDRVRLL 60 NFPHPEAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK 120 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSSTAAA ASVTSISVGR DSFITHRAFC DALAQESARH QPNLSSLGSN 240 LYGGTSNTGL ALSHHHHQQV VGPNIDHHHH NNHSAAADIL RLGGGGGNAR TGQFDHLLSP 300 PSMGSSFRPP QSSGTFFMNQ DQPSQQYHHD QEQLQSKQFH GLMQFSDHQN NSNNSSSGGN 360 LFNLPFLSNS SNSNNATGAS NTNLLVHPEH QYNSNGSGAG GEGGSSLFSS HMIGGGGGDH 420 ISSGNVTSLY SSQVQNNHHG VSHMSATALL QKAAQMGSTT SSNNTSASLL RSFGSTSSTK 480 SERPAAAASL VPANLGGIFG GSSENENNLQ DLMNSLAAGG GSSSIFGGGS DRLTRDFLGV 540 GQIVRSMSGG QQHTHIEHMS SLDSESNAAP STQSFGGGGN FQ

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MAAAGAIANQ DISKDKAIFV RVSGKDKNYW YVIEEKSAID FDDGSTMIGC ESDNDRVRLL  60
NFPHPEAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK  120
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKRYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSSTAAA ASVTSISVGR DSFITHRAFC DALAQESARH QPNLSSLGSN  240
LYGGTSNTGL ALSHHHHQQV VGPNIDHHHH NNHSAAADIL RLGGGGGNAR TGQFDHLLSP  300
PSMGSSFRPP QSSGTFFMNQ DQPSQQYHHD QEQLQSKQFH GLMQFSDHQN NSNNSSSGGN  360
LFNLPFLSNS SNSNNATGAS NTNLLVHPEH QYNSNGSGAG GEGGSSLFSS HMIGGGGGDH  420
ISSGNVTSLY SSQVQNNHHG VSHMSATALL QKAAQMGSTT SSNNTSASLL RSFGSTSSTK  480
SERPAAAASL VPANLGGIFG GSSENENNLQ DLMNSLAAGG GSSSIFGGGS DRLTRDFLGV  540
GQIVRSMSGG QQHTHIEHMS SLDSESNAAP STQSFGGGGN FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-30	155	240	3	71	Zinc finger protein JACKDAW
5b3h_F	3e-30	155	240	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297791.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3	1e-128	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2P6R4H0	0.0	A0A2P6R4H0_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004297791.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-103	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]