PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000151.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 541aa    MW: 60103.8 Da    PI: 6.4634
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000151.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.24.2e-24139192155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  FANhyb_rscf00000151.1.g00008.1 139 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 192
                                     68*******************.9*******************************8 PP
2Response_reg58.83.1e-2099523109
                                     CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEE CS
                    Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfls 99 
                                     y +v+++  +++al ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l 
  FANhyb_rscf00000151.1.g00008.1   9 Y-SVTTCCLARDALYLLREKKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLL 85 
                                     4.8999999********999999**********************6644.8**************************** PP

                                     SS--HHHHHH CS
                    Response_reg 100 Kpfdpeelvk 109
                                     Kp+ ++el++
  FANhyb_rscf00000151.1.g00008.1  86 KPIRMKELRN 95 
                                     *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.5941101IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.5E-11197IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.16E-208100No hitNo description
SuperFamilySSF521723.84E-229100IPR011006CheY-like superfamily
PfamPF000728.0E-17996IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.5E-289101No hitNo description
Gene3DG3DSA:1.10.10.601.1E-27137197IPR009057Homeodomain-like
SuperFamilySSF466896.81E-17137196IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-21139192IPR006447Myb domain, plants
PfamPF002495.6E-8141191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MALANLTIYS VTTCCLARDA LYLLREKKDG YDIVISDVNM PDMDGFKLLE HVGLEMDLPV  60
IMMSVDGETS RVMKGVQHGA CDYLLKPIRM KELRNIWQHI SMMMDTSLVS MTSLHLEKER  120
TFENKYDDKD FGDSSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  180
ENVASHLQKY RLYLSRLQKE NDLKSSFGGM KHSDYPSKDP QVVGLQNSIS IKQNDVTNGS  240
YRFSGNTLVA PTVVDPKSLE DDVNGIIPVP VAEPKRGSTR SIPDSHKTRS SQVDSSHSYA  300
ETKKGLIGNV ADSLKTRSSQ VGFNQSFASV ESEINFTMPT KFSWSEAQMK QEHKPVVQLD  360
NGFNTSQPPG VQHHLQADLL KSIPSISSRP SISDGETTRP IKSKPSQAAY RNSHISHASP  420
TISAADSFSD HTKGCVVDQG FDPSSNSLSN MKNQGFNLSY LTNFEAGQKN LVFGSGSSFP  480
SLEDELQICL YPGDYFGMNL GVSEFVDPEV PAHSYEALRF GCEYPCESSD YSLADQSLFI  540
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17135197163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004310018.10.0PREDICTED: two-component response regulator ARR11 isoform X1
SwissprotQ5N6V83e-94ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2P6R0X40.0A0A2P6R0X4_ROSCH; Putative response regulator and transcription factor RR-B-type family
STRINGXP_004310018.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-93response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]