PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000139.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 1101aa MW: 123054 Da PI: 9.5505

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000139.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	39	74	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E +++++a +++G + Wk++a+ + +R +++ FANhyb_rscf00000139.1.g00008.1 39 QWSKGELQRFYEAYRKYGQN-WKKVAAVVR-NRNIEMV 74 6***************88.******9.9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.81E-9	35	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-4	39	75	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-6	39	79	IPR001005	SANT/Myb domain
CDD	cd00167	4.25E-4	40	74	No hit	No description
Pfam	PF06584	5.6E-34	658	758	IPR033471	DIRP domain
SMART	SM01135	4.6E-59	658	759	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1101 aa Download sequence Send to blast
MVPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK 60 KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMCV YVCTVFVSPF 120 ACMSDINDLE EGSESERESN DAIRYSRKPQ KRKLGKDSVS KDMFQPHSTA SVDGCLSHLK 180 RRRLDGNQPR AVGKRTPRFP VQYSSKKDDG ENYASPIRKG RKSEADNEYD VAKVAALLTE 240 ASHRGGSPRL SQTPYRRFTV QSSQRMPPSW KARADLRDAS MEEDCLEGSV GSRGAETGDY 300 TRDSSSLMDM EGVGTVEIRR GKKVYGKKEK VKDIGNHQFD DGGEACSGTE GLHVSTKGKT 360 DIEVSDAKGD RFYSQVPRQE CGKPYFGDDS AELDALEALH TLADLSLMMP ASTMESGSSM 420 QLKDERTASE MEEKSNMPES TSTSQFRNKN KLPGGKQREP IADSRTEGTN AKKSKLARDL 480 TPIDINVVSE SEQLHSTSKS WRRKRKPTVS KISNAEANID STVNEPSYSE VFGQEENKSV 540 VKGRRTGQIS TPSKQWKSVR PGDGSLNSDF GQTVSNVMVA TAEGRPTAKQ VHSPTKQRSR 600 RKRYLPRATV PKSSENILKT QLHKHSNSLQ DRILYLKEKM SCCLSSHLVR RWCTFEWFYS 660 AIDYPWFAKR EFEEYLNHVG LGHIPRLTRV EWGVIRSSLG KPRRFSEHFL SEEREKLKQY 720 RESVRKHYAE LRSGVREGLP TDLARPLSVG QRVIALHPKT REVHDGSVLT VDHDKCRVQF 780 DRPEIGVEFV MGDTNHIISQ PKGASVDIAS AQTAVSQPGV VAHNQAREAD IQALSDLNRA 840 LDKKKALLME LSTINNILEN QNSGECSLKD CDKKHYATVL ESSALLNLRH RNTYPGNTLP 900 PLPKYPMNST VYGSLPSSFD ISTSQESGSS IAEIVEVSRL KAHTLVNAAV QAMSSRKEGE 960 EAYVRVRRAL DSINIQNLTS DSRSAVNRTQ EQVNGTLGHR NQLTSGASEP NTSDSSGPKL 1020 HTETDKNESQ MLSEVITACV MAMNMIQTCT ERQYPPAVVA QVLDYAVTSL HPRCPQNVGM 1080 YREIQMCMGR IKTQILALVP T

Sequence ? help Back to Top

Protein Sequence Length: 1101 aa Download sequence Send to blast

MVPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK  60
KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMCV YVCTVFVSPF  120
ACMSDINDLE EGSESERESN DAIRYSRKPQ KRKLGKDSVS KDMFQPHSTA SVDGCLSHLK  180
RRRLDGNQPR AVGKRTPRFP VQYSSKKDDG ENYASPIRKG RKSEADNEYD VAKVAALLTE  240
ASHRGGSPRL SQTPYRRFTV QSSQRMPPSW KARADLRDAS MEEDCLEGSV GSRGAETGDY  300
TRDSSSLMDM EGVGTVEIRR GKKVYGKKEK VKDIGNHQFD DGGEACSGTE GLHVSTKGKT  360
DIEVSDAKGD RFYSQVPRQE CGKPYFGDDS AELDALEALH TLADLSLMMP ASTMESGSSM  420
QLKDERTASE MEEKSNMPES TSTSQFRNKN KLPGGKQREP IADSRTEGTN AKKSKLARDL  480
TPIDINVVSE SEQLHSTSKS WRRKRKPTVS KISNAEANID STVNEPSYSE VFGQEENKSV  540
VKGRRTGQIS TPSKQWKSVR PGDGSLNSDF GQTVSNVMVA TAEGRPTAKQ VHSPTKQRSR  600
RKRYLPRATV PKSSENILKT QLHKHSNSLQ DRILYLKEKM SCCLSSHLVR RWCTFEWFYS  660
AIDYPWFAKR EFEEYLNHVG LGHIPRLTRV EWGVIRSSLG KPRRFSEHFL SEEREKLKQY  720
RESVRKHYAE LRSGVREGLP TDLARPLSVG QRVIALHPKT REVHDGSVLT VDHDKCRVQF  780
DRPEIGVEFV MGDTNHIISQ PKGASVDIAS AQTAVSQPGV VAHNQAREAD IQALSDLNRA  840
LDKKKALLME LSTINNILEN QNSGECSLKD CDKKHYATVL ESSALLNLRH RNTYPGNTLP  900
PLPKYPMNST VYGSLPSSFD ISTSQESGSS IAEIVEVSRL KAHTLVNAAV QAMSSRKEGE  960
EAYVRVRRAL DSINIQNLTS DSRSAVNRTQ EQVNGTLGHR NQLTSGASEP NTSDSSGPKL  1020
HTETDKNESQ MLSEVITACV MAMNMIQTCT ERQYPPAVVA QVLDYAVTSL HPRCPQNVGM  1080
YREIQMCMGR IKTQILALVP T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	153	RKPQKRKL
2	179	183	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466289.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A2P6R700	0.0	A0A2P6R700_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004302418.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding