PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000100.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 345aa    MW: 38331.1 Da    PI: 6.4486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000100.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14162208354
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  FANhyb_rscf00000100.1.g00011.1 162 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 208
                                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-12162208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-14163215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-5172211No hitNo description
Gene3DG3DSA:3.30.70.2605.9E-4245294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMCGKKEDQG ECSQTHHHQQ VQNFQEQLLL QQQQQMMQQQ QENHNDLYGS RGLIFPHDQP  60
PPPILQPWTL PQIHAFNNNI DPFLVPPPAP SSSYASFFNR RGAPSLQFTY DGSASDHHHL  120
RILSEALGPM VQPGSAPFGL QAELGKLTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA  180
KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSVIAETSP VPTETDELIV DDASEEEGKF  240
VIKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VKNVLFITGE EDHSSSGEEQ  300
QQYCISSIQE ALKAVMEKSG GGEESNSSGS VKRQRTTNNT NVSIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297146.10.0PREDICTED: transcription factor bHLH30
RefseqXP_011462943.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-116BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2P6R2280.0A0A2P6R228_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297146.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]