PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000094.1.g00022.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 256aa MW: 28993.8 Da PI: 5.672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000094.1.g00022.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	140	182	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r RR+ri ++ +eL +l+P K++ ae+ + A +YIk Lq FANhyb_rscf00000094.1.g00022.1 140 AARERRRRITEKTNELGKLVPCG-----SKMNTAEMFQAAYKYIKFLQ 182 6699****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.589	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-11	136	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-11	137	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-9	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-5	140	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.88E-4	148	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MFSFQTQQDE LAAASILGLD YSIASSLDDP NPLLLSQSFF SDQDFLLDDH EYYYHDEYPK 60 RQKTQQQFHP SFNGFVPNPS FIPELVQPQL PLPPPEFQIQ QQPAAQLYAN YRLSNEVIST 120 EAKMKANSNG GVSLSPQSIA ARERRRRITE KTNELGKLVP CGSKMNTAEM FQAAYKYIKF 180 LQAQVAMLKL MDSVQANKGH GLHNQEGLQV LASPIVQEKL YSEEKCLVSR EFVETLASNQ 240 DFQSKPLLKD NIAKLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460417.1	0.0	PREDICTED: transcription factor HEC2
Refseq	XP_011460418.1	0.0	PREDICTED: transcription factor HEC2
TrEMBL	A0A2P6Q6L7	1e-136	A0A2P6Q6L7_ROSCH; Putative transcription factor bHLH family
STRING	XP_009354039.1	1e-56	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	3e-22	bHLH family protein