PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000084.1.g00015.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 553aa    MW: 61898 Da    PI: 6.5108
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000084.1.g00015.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.81.5e-951815492374
                            GRAS   2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                     +e L+++A++++s++l+laq +L rl+++       + p g+p+qR+a yf+ AL++ l+    ++ ++   + +s+++
  FANhyb_rscf00000084.1.g00015.1 181 IEELIRAADCFDSDELNLAQVILDRLNQRqrltspnSKPVGKPLQRAAVYFKDALQSLLNT---STGSSPVRNLSSWSE 256
                                     679************************987775444556778******************9...555666666677788 PP

                            GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvg 148
                                      ++++ a+k fs +sPi+ fsh+t+Nqa+lea++g++ +H+iDfdi+ G+Q+++L+++L++++     +pp lRiT+v+
  FANhyb_rscf00000084.1.g00015.1 257 IVQTIRAYKGFSGISPIPMFSHFTTNQALLEALNGSSFIHVIDFDIGLGGQYASLMKELTEKAnvsrTNPPVLRITAVV 335
                                     **************************************************************9887778********** PP

                            GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                                     ++e   + e + ++e+L++fA+el+++f++++l+++++e l++++ ++  gE++aV l+  ++r l   +++++   ++
  FANhyb_rscf00000084.1.g00015.1 336 PEE--YAVESRLVRENLSQFAQELRIRFQIDFLLVRTFEILSFKAVKFMDGEKTAVLLSPYIMRRL---GATDN-VGAF 408
                                     *66..99999*******************************************************9...44444.667* PP

                            GRAS 228 LklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                     L  ++++sP vvv+v+ e  a+ +++sF + f++ le++s +++sl+a +p   e  +k+E++ll+++i+ +v ++g++
  FANhyb_rscf00000084.1.g00015.1 409 LGDMRRVSPSVVVFVDGEgmAESGATSFRRNFVSGLEFFSIMMESLDAAVPGG-EMVRKIEAFLLRPKIEAAVEAAGRR 486
                                     ******************65556999***********************9765.66779******************98 PP

                            GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                            +  Wre ++ aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  FANhyb_rscf00000084.1.g00015.1 487 -------VPPWREVFHGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 549
                                     .......99************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.196154529IPR005202Transcription factor GRAS
PfamPF035145.1E-93181549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRVPVTTPQT NNNNNQSPNP KPETNLGFHT PSRINPNLCY EPTSVLDLRH SPSPVAADKP  60
SKLSPISDVL THHDHPLEWD EQVDWDSIMR DLGLHDDSVP NLKATTTTNT HLNHHHNSEP  120
QIHHLPEYPH PQPFDPTQLV HSDFSLSEVY SSQNFTHHNL TSYDQTDTHP SLNSNVGFDF  180
IEELIRAADC FDSDELNLAQ VILDRLNQRQ RLTSPNSKPV GKPLQRAAVY FKDALQSLLN  240
TSTGSSPVRN LSSWSEIVQT IRAYKGFSGI SPIPMFSHFT TNQALLEALN GSSFIHVIDF  300
DIGLGGQYAS LMKELTEKAN VSRTNPPVLR ITAVVPEEYA VESRLVRENL SQFAQELRIR  360
FQIDFLLVRT FEILSFKAVK FMDGEKTAVL LSPYIMRRLG ATDNVGAFLG DMRRVSPSVV  420
VFVDGEGMAE SGATSFRRNF VSGLEFFSIM MESLDAAVPG GEMVRKIEAF LLRPKIEAAV  480
EAAGRRVPPW REVFHGAGMR AVELSQFADF QAQCLLGKVQ VRGFHVAKRQ AELVLCWHDR  540
ALVATSAWRC QGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2818654825378Protein SCARECROW
5b3h_A8e-2818654824377Protein SCARECROW
5b3h_D8e-2818654824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300613.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-171SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2P6RML00.0A0A2P6RML0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004300613.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-173GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]