PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000046.1.g00015.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 1004aa MW: 110034 Da PI: 7.3182

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000046.1.g00015.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.7	7.8e-17	363	461	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+k l+ sd++k grlvlpkk+ae++ ++++e+ lt+ d+ g+ W +++++ +++s++yvl+ G ++ +L+ FANhyb_rscf00000046.1.g00015.1 363 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLTVHDSLGKGWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQ 440 89************************555566777***********99899999999.********* PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+v+F++ + +++l v+ +r FANhyb_rscf00000046.1.g00015.1 441 AGDIVTFSRLE-PGGKL-VMGCR 461 ******654.55544.54444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS01359	0	42	99	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:2.40.330.10	8.9E-28	359	463	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.81E-19	360	459	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.43E-20	361	462	No hit	No description
Pfam	PF02362	4.0E-14	363	461	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-18	363	463	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.925	363	464	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.098	604	654	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.1E-9	609	651	IPR011124	Zinc finger, CW-type
PROSITE profile	PS51050	12.825	687	737	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.1E-9	692	734	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MSSSAASSSS SKCCYNSECG ELKPEHPKKA WRLRTGDCAE LCDRCAVIYE EGRFCETFHV 60 KASGWRCCES CGKRVHCGCI VSAQAFTLLD PGGIECVTCA RKHIVLTSNP AWAPTLLFHS 120 PFPERPKDMS GKNWTQLAGS GPVPWRQAPS LFNTSISSPD LHTRVPYGID GSMGINKLNA 180 GERISVHPLE KKKAEDFSER LMKVNLAIGT PVTFENGNSG NKHMEQSRSC LNVSQQPISL 240 KEEQSTPQFV LSVPYVSASD TNGQTNGQVV VTGTNLQPAL PMANQFHGIH GALYNGVELS 300 GDTQIRYAKS GLDARGRLSR YWPRFTDKEL QQISGDCCDV CSINYDCLSL TILSSNSVIT 360 PLFEKMLSAS DAGKIGRLVL PKKCAEAYFP PISHPEGLPL TVHDSLGKGW VFQFRFWPNN 420 NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL EPGGKLVMGC RKALTAPSDQ ENDTDKMGNG 480 ASANAAVGIT DTKSGEVFSN AELAVRSTVA KGDKSGYVSK DVVGAKSLIS RKRKNSILGS 540 KSKRLRIEKE DLIELKITWE EAQGLLRPPP KHVPTVVVIE GFEFEEYEDG PILGKPKLFT 600 MGSKGEKIQW AQCEVCCKWR KLPVNALLPS KWTCSDNSWD PDRSLCSAAQ ELTIEELEDL 660 LPRNTVAPKN VKDCPPISVL ELHISFLCEK IQWAQCEVCC KWRKLPVNAL LPSKWTCSDN 720 SWDPDRSLCS AAQELTIEEL EDLLPRNTVA PKNVKAAKQD PDSIEALEGL DTLADLAILG 780 EGESLPSSAQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCICNVCSTV KRRFRTLMMR 840 REKNKSEKEA ETTRKKQQQQ QFQDDDTLLS GNTGSSSPNI RVEVLDLSDD DFNRTKSPTP 900 PYKGQIDLNI QPEREEDLSP GSDSGGMIKL LQDATERYLR QQRQSLSISV GGERSLGNKS 960 QLAGIEAGGE PLGYIAILGN NNHDGGNDHP ATLSINASAS MTAT

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MSSSAASSSS SKCCYNSECG ELKPEHPKKA WRLRTGDCAE LCDRCAVIYE EGRFCETFHV  60
KASGWRCCES CGKRVHCGCI VSAQAFTLLD PGGIECVTCA RKHIVLTSNP AWAPTLLFHS  120
PFPERPKDMS GKNWTQLAGS GPVPWRQAPS LFNTSISSPD LHTRVPYGID GSMGINKLNA  180
GERISVHPLE KKKAEDFSER LMKVNLAIGT PVTFENGNSG NKHMEQSRSC LNVSQQPISL  240
KEEQSTPQFV LSVPYVSASD TNGQTNGQVV VTGTNLQPAL PMANQFHGIH GALYNGVELS  300
GDTQIRYAKS GLDARGRLSR YWPRFTDKEL QQISGDCCDV CSINYDCLSL TILSSNSVIT  360
PLFEKMLSAS DAGKIGRLVL PKKCAEAYFP PISHPEGLPL TVHDSLGKGW VFQFRFWPNN  420
NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL EPGGKLVMGC RKALTAPSDQ ENDTDKMGNG  480
ASANAAVGIT DTKSGEVFSN AELAVRSTVA KGDKSGYVSK DVVGAKSLIS RKRKNSILGS  540
KSKRLRIEKE DLIELKITWE EAQGLLRPPP KHVPTVVVIE GFEFEEYEDG PILGKPKLFT  600
MGSKGEKIQW AQCEVCCKWR KLPVNALLPS KWTCSDNSWD PDRSLCSAAQ ELTIEELEDL  660
LPRNTVAPKN VKDCPPISVL ELHISFLCEK IQWAQCEVCC KWRKLPVNAL LPSKWTCSDN  720
SWDPDRSLCS AAQELTIEEL EDLLPRNTVA PKNVKAAKQD PDSIEALEGL DTLADLAILG  780
EGESLPSSAQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCICNVCSTV KRRFRTLMMR  840
REKNKSEKEA ETTRKKQQQQ QFQDDDTLLS GNTGSSSPNI RVEVLDLSDD DFNRTKSPTP  900
PYKGQIDLNI QPEREEDLSP GSDSGGMIKL LQDATERYLR QQRQSLSISV GGERSLGNKS  960
QLAGIEAGGE PLGYIAILGN NNHDGGNDHP ATLSINASAS MTAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-58	323	466	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460287.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300
Swissprot	Q0D5G4	1e-174	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A2P6Q3L2	0.0	A0A2P6Q3L2_ROSCH; Putative chromatin regulator PHD family
STRING	XP_004293496.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7738	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-121	VP1/ABI3-like 3