PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000018.1.g00013.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 581aa MW: 65400.2 Da PI: 9.0621

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000018.1.g00013.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.3	1.1e-34	13	167	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLp.k........kvkaeekewy 59 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp + v+ + + + FANhyb_rscf00000018.1.g00013.1 13 LPAGVKFDPTDQELI-EHLEAKVEAKDtkshplI---DefipTIEGEdGICYTHPEKLPgHhllssslvGVTRDGLSRH 87 799**********.99***996665443...133333666646*******5478877655333445588 PP NAM 60 fFskrdkkyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhey 126 fF++ +k+y+tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y FANhyb_rscf00000018.1.g00013.1 88 FFHRPSKAYTTGTRKRRKiqtecdhlqaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQY 165 ***************8566666665433778********.999*******5547999999******* PP NAM 127 rl 128 +l FANhyb_rscf00000018.1.g00013.1 166 HL 167 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-37	7	186	IPR003441	NAC domain
PROSITE profile	PS51005	32.11	13	186	IPR003441	NAC domain
Pfam	PF02365	7.6E-16	14	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MEINWCLQDW LGLPAGVKFD PTDQELIEHL EAKVEAKDTK SHPLIDEFIP TIEGEDGICY 60 THPEKLPGHH LLSSSLVGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DHLQAGGETR 120 WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEKEGELVV 180 SKIFYQTQPR QCNWSSERSS AASASLTGEG SSDLRRDSGG SGSCTSSKEI IVSHNTHLRD 240 HHDQMSAAAA VAQVNVVAQP LTSYNAIDIH QLKSDHFSFV PFRKSFDEVG IGEASTAREP 300 SIASGTCEDL RERPQLHHVA HDQLLHHHQH QQQVHHEQQQ HQHGQTHLQQ QIATAASFHI 360 SRPSHPISTI ISPPSLHHSA TSIILDQDAY HVSRSIMLQN EHFQQQQQQQ QQQQQQQQQQ 420 QQQHHKQMGG RSASGLEELI MACTSSSNVK EESSSMANPQ EAEWMKNQRY KYGVVRERTS 480 ARLLKCRRPS VRHRTAPARA HLHPSRLHQR SLAIFIPASL LNSSFPAIST LFEVLGDLAR 540 KLEFGGLTGQ GKWSGTLLES AGVKASSRRR RTVDNGGMPA L

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MEINWCLQDW LGLPAGVKFD PTDQELIEHL EAKVEAKDTK SHPLIDEFIP TIEGEDGICY  60
THPEKLPGHH LLSSSLVGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DHLQAGGETR  120
WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEKEGELVV  180
SKIFYQTQPR QCNWSSERSS AASASLTGEG SSDLRRDSGG SGSCTSSKEI IVSHNTHLRD  240
HHDQMSAAAA VAQVNVVAQP LTSYNAIDIH QLKSDHFSFV PFRKSFDEVG IGEASTAREP  300
SIASGTCEDL RERPQLHHVA HDQLLHHHQH QQQVHHEQQQ HQHGQTHLQQ QIATAASFHI  360
SRPSHPISTI ISPPSLHHSA TSIILDQDAY HVSRSIMLQN EHFQQQQQQQ QQQQQQQQQQ  420
QQQHHKQMGG RSASGLEELI MACTSSSNVK EESSSMANPQ EAEWMKNQRY KYGVVRERTS  480
ARLLKCRRPS VRHRTAPARA HLHPSRLHQR SLAIFIPASL LNSSFPAIST LFEVLGDLAR  540
KLEFGGLTGQ GKWSGTLLES AGVKASSRRR RTVDNGGMPA L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024179478.1	0.0	NAC domain-containing protein 75-like isoform X3
Swissprot	Q9M0F8	1e-159	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2P6RJY3	0.0	A0A2P6RJY3_ROSCH; Putative transcription factor NAM family
STRING	XP_004287496.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-116	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]