PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon20152345_s.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 136aa MW: 14855.7 Da PI: 4.4144 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.8 | 1.1e-07 | 1 | 24 | 33 | 56 |
AP2 33 lgkfgtaeeAakaaiaarkklege 56 lg+f t+eeAa a+++a+k+++g+ FANhyb_icon20152345_s.1.g00001.1 1 LGTFNTPEEAALAYDQAAKRIRGN 24 79*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-9 | 1 | 32 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.76E-12 | 1 | 30 | No hit | No description |
Pfam | PF00847 | 3.1E-4 | 1 | 23 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-12 | 1 | 32 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-4 | 1 | 37 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.245 | 1 | 31 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
LGTFNTPEEA ALAYDQAAKR IRGNKAKLNF PATPAPAPAP ARLQPPSKKR CMAPESTQSS 60 ALAMMGMGPY YPPFQNECYS KSETTADHDH EYELKEQILS LEKILGLDEP VTPNEVTSGL 120 GMGEPESSDL WMLDDL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011462742.1 | 2e-95 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A3Q8TBG5 | 5e-94 | A0A3Q8TBG5_FRAAN; Transcription factor ERF54 | ||||
STRING | XP_004296870.1 | 8e-95 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-19 | ethylene-responsive element binding protein |