PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00040793_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 135aa MW: 14998.6 Da PI: 4.398 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 80.7 | 1.9e-25 | 1 | 48 | 50 | 97 |
NF-YB 50 asdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 asdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re+egek FANhyb_icon00040793_a.1.g00001.1 1 ASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 48 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-24 | 1 | 78 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.13E-17 | 1 | 59 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.5E-11 | 5 | 23 | No hit | No description |
PRINTS | PR00615 | 2.5E-11 | 24 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKVYLQR FREMEGEKSS MAARDKDSSG 60 GVVGFEGGGE EQEQEEGESI GSSSRSRDTC TAAGGFIRWV LVGLGLERVG LGPTWVDPDD 120 EKKQNRLYEL LSLNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 3e-18 | 1 | 43 | 51 | 93 | NF-YB |
4awl_B | 3e-18 | 1 | 43 | 52 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-18 | 1 | 43 | 52 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-31 | nuclear factor Y, subunit B3 |