PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00016347_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 99aa MW: 11675.5 Da PI: 10.0241 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 71.3 | 1.9e-22 | 2 | 94 | 281 | 373 |
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 r E+e++gre+vn+vaceg+er+ r et+++W+ r ++aGF+++ l+ ++++++k +++ ++ + v+e+ + FANhyb_icon00016347_a.1.g00001.1 2 MRLGFEKEFIGREVVNIVACEGTERTVRPETYKQWQVRNMRAGFRQLLLDREVMNKIKDKVKMGYNPDFVVDEDGRW 78 56778************************************************************999********* PP GRAS 358 lvlgWkdrpLvsvSaW 373 +++gWk+r ++ +W FANhyb_icon00016347_a.1.g00001.1 79 MLQGWKGRIMFGSACW 94 **************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.684 | 1 | 75 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.5E-20 | 2 | 94 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
QMRLGFEKEF IGREVVNIVA CEGTERTVRP ETYKQWQVRN MRAGFRQLLL DREVMNKIKD 60 KVKMGYNPDF VVDEDGRWML QGWKGRIMFG SACWAPSKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024157168.1 | 2e-59 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 6e-42 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P6QIY8 | 4e-58 | A0A2P6QIY8_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_008223833.1 | 1e-50 | (Prunus mume) | ||||
STRING | XP_009375902.1 | 1e-50 | (Pyrus x bretschneideri) | ||||
STRING | XP_004294644.1 | 8e-51 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14801 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 2e-44 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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