PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00013114_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 140aa    MW: 14960.8 Da    PI: 9.4631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00013114_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1665113255
                               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                        y+G+r  +++g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  FANhyb_icon00013114_a.1.g00001.1  65 LYRGIR--SRSGKWVSEIREPRK---STRIWLGTYAMPEMAAAAYDVAAIALKG 113
                                       69***6..678*********843...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-964113IPR001471AP2/ERF domain
CDDcd000183.08E-1564121No hitNo description
PROSITE profilePS5103218.92765121IPR001471AP2/ERF domain
SMARTSM003804.4E-2565127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2565122IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1765122IPR016177DNA-binding domain
PRINTSPR003674.5E-66677IPR001471AP2/ERF domain
PRINTSPR003674.5E-6103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADPYGNVPK SDEQPSDSNP PFFIQLPPTS STSSSIVIDH QDLSGLRSPT GGGSVSSSPR  60
SRHPLYRGIR SRSGKWVSEI REPRKSTRIW LGTYAMPEMA AAAYDVAAIA LKGPDTTLNF  120
PSALITYPIP ASSAASDIRA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308116.15e-76PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ1ECI25e-30ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A3Q8T9Y96e-67A0A3Q8T9Y9_FRAAN; Transcription factor ERF16
STRINGXP_004308116.12e-75(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-24ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]