PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006132_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 267aa MW: 30441.2 Da PI: 7.6905

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006132_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	80	165	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwe 77 fYn+YA++ GF +r sk ++s +g ++ fvCs egkr+++k++ + + +raetr gC a++k++ + +gk+ FANhyb_icon00006132_a.1.g00001.1 80 FYNRYAYRFGFGTRLSKAHTS-SSGLLKDILFVCSAEGKRRKDKRS-VYVKFHRAETRFGCGARMKIRYDMsSGKYS 154 **************99998.8888*************999.9999*************9998* PP FAR1 78 vtkleleHnHe 88 v +++ +H+H FANhyb_icon00006132_a.1.g00001.1 155 VVEFVADHTHV 165 ********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-16	80	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
DAEATSTSDY EISSKMDFGS GIDLNGFVDV ENNEVGGSEE ESEVVRRPSE NAELIHSRMR 60 QELIPVVGME FETEKDALAF YNRYAYRFGF GTRLSKAHTS SSGLLKDILF VCSAEGKRRK 120 DKRSVYVKFH RAETRFGCGA RMKIRYDMSS GKYSVVEFVA DHTHVTSTPS KTHRFRSHRN 180 ISLAQNVQAD MAEDAGLDPK ETLELLSRQA GGRENLGFIP EDYRNYLRSK RTREMKSGDT 240 GGVLEYLQRM QSDNPSFFML YKLMRMI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164275.1	1e-142	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6PSC3	1e-142	A0A2P6PSC3_ROSCH; Putative transcription factor FAR family
STRING	XP_004292935.1	1e-131	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-35	FAR1-related sequence 5