PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003233_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 420aa    MW: 46397.2 Da    PI: 7.1522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003233_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174897255
                               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                      +y+GVr+++ +gr++AeIrdp     +   r +lg+f+taeeAa a++ a+++++g
  FANhyb_icon00003233_a.1.g00001.1 48 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEEAACAYDCAARAMRG 97
                                      69*******.**********6.....335999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-2948104IPR001471AP2/ERF domain
SMARTSM003808.0E-3348111IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2148105IPR016177DNA-binding domain
PfamPF008471.7E-104897IPR001471AP2/ERF domain
PROSITE profilePS5103221.91848105IPR001471AP2/ERF domain
CDDcd000188.04E-3048104No hitNo description
PRINTSPR003672.5E-94960IPR001471AP2/ERF domain
PRINTSPR003672.5E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEEAFRKLNG FTPTSQPDVP ISVPSKKSTP TNKRSLKEAT AGSASTLRYR GVRRRPWGRY  60
AAEIRDPHSK ERRWLGTFDT AEEAACAYDC AARAMRGVKA RTNFVYPPTT QDHLVPAFTF  120
HHQKQSQPSV KYHSTARGYG QIVPNWPPFA TYPRDFSGNS DRSCTTANSA NCNTASLNML  180
FLRNFINNNS IPSQNPNPSS VASPNPPPHS QAQSFSQNQF QYTNGSSPNF SASGCNSFVN  240
NDTNTSGTTT SHGNSSSSIM MNGTSISCAT LHETPAKATV TSTGFVDSDF LPIESSDSGL  300
LEEVIHQFFP KPFSKESNPR KSVESFPATS FDLRVQQPSL DVKEVQQPHV CPGEFDYQQE  360
QQHLGSFNGV LEVAEQTLPL YNDLPVNFQM NSADHSMVAM DHSLFQQYYC PEFLGSLQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19481041471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301056.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A3S8T9360.0A0A3S8T936_FRAAN; Transcription factor ERF65
STRINGXP_004301056.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like