PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00002349_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 23016.4 Da PI: 7.2753 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 112 | 128 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+C++C k+++ + L+ FANhyb_icon00002349_a.1.g00001.1 112 YVCHNCRKRYNALDALQ 128 9**********999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00531 | 2.2E-39 | 1 | 160 | IPR002853 | Transcription initiation factor IIE subunit alpha, N-terminal |
PROSITE profile | PS51344 | 22.356 | 1 | 89 | IPR017919 | Transcription factor TFE/TFIIEalpha HTH domain |
SuperFamily | SSF46785 | 2.11E-5 | 4 | 44 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02002 | 4.2E-6 | 4 | 45 | IPR024550 | TFIIEalpha/SarR/Rpc3 HTH domain |
Gene3D | G3DSA:1.10.10.10 | 7.3E-4 | 7 | 53 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:3.30.40.10 | 7.7E-18 | 99 | 157 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57783 | 1.38E-8 | 101 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
RQWVREEDLA KDLKLHPKQL RRVLQFLMEE RLVIREHRKE TAKGVKIFSA AVAATANGQQ 60 HRKEGDEKIK LLTHSYCCLD YAQIYDVVRY RLHLLKKELK DELERKHTVE EYVCHNCRKR 120 YNALDALQLV SMEDEYFHCE ICNGILVAEN GKLDSQNTTG RDCKAMLQNM EGVLHGFVDS 180 IFVGLFDHLV DDPFNGK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011464246.1 | 1e-119 | PREDICTED: general transcription factor IIE subunit 1-like | ||||
TrEMBL | A0A2P6P3G1 | 1e-112 | A0A2P6P3G1_ROSCH; Putative transcription initiation factor IIE subunit alpha, TFIIEalpha/SarR/Rpc3 HTH | ||||
STRING | XP_004299240.1 | 6e-88 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2430 | 8 | 11 |