PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002349_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 197aa    MW: 23016.4 Da    PI: 7.2753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002349_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078112128117
                                       EEETTTTEEESSHHHHH CS
                           zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                       y+C++C k+++  + L+
  FANhyb_icon00002349_a.1.g00001.1 112 YVCHNCRKRYNALDALQ 128
                                       9**********999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005312.2E-391160IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PROSITE profilePS5134422.356189IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SuperFamilySSF467852.11E-5444IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF020024.2E-6445IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
Gene3DG3DSA:1.10.10.107.3E-4753IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.107.7E-1899157IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577831.38E-8101154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
RQWVREEDLA KDLKLHPKQL RRVLQFLMEE RLVIREHRKE TAKGVKIFSA AVAATANGQQ  60
HRKEGDEKIK LLTHSYCCLD YAQIYDVVRY RLHLLKKELK DELERKHTVE EYVCHNCRKR  120
YNALDALQLV SMEDEYFHCE ICNGILVAEN GKLDSQNTTG RDCKAMLQNM EGVLHGFVDS  180
IFVGLFDHLV DDPFNGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464246.11e-119PREDICTED: general transcription factor IIE subunit 1-like
TrEMBLA0A2P6P3G11e-112A0A2P6P3G1_ROSCH; Putative transcription initiation factor IIE subunit alpha, TFIIEalpha/SarR/Rpc3 HTH
STRINGXP_004299240.16e-88(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811