PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00001828_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25649.3 Da PI: 5.1914 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H FANhyb_icon00001828_a.1.g00001.1 86 YKCETCNKVFKSYQALGGHRASH 108 9************9999998887 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H FANhyb_icon00001828_a.1.g00001.1 147 HECPVCFRVFSSGQALGGHKRSH 169 79******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 72 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.01 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.15E-7 | 86 | 108 | No hit | No description |
Pfam | PF13912 | 6.2E-12 | 86 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.15E-7 | 142 | 169 | No hit | No description |
Pfam | PF13912 | 2.8E-11 | 146 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 147 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MDSCANNNVE PEPVSSISDA TTEEDVAFCL MMLSRDKWKK QDKQQQEEQD YQDEDVEVEY 60 RSLDESDESE EQLIKFQRTK SSRGKYKCET CNKVFKSYQA LGGHRASHKK IKAASAANPN 120 PNRIVYEPEP DPEINHNAGS SSFVKTHECP VCFRVFSSGQ ALGGHKRSHV TGSAAINYTH 180 HHAPSMKSLA KLGDNMIDLN LPAPVDDDEM SQIELSAVSD AEFVNPIRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306958.1 | 1e-167 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | A0A2P6SFP4 | 1e-122 | A0A2P6SFP4_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004306958.1 | 1e-167 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-38 | C2H2-like zinc finger protein |