PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000871_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 549aa MW: 63467.8 Da PI: 9.6008

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000871_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23	2.7e-07	23	101	7	87
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 A+e GF +++++s+k+ ++g k ++vC+++ ++e + + +r++++ r+gC+ k + k +++w+ + FANhyb_icon00000871_a.1.g00001.1 23 ANENGFATVIRRSTKKdPQTGIYLKIELVCTRSRQPELKGSG----KRRTPSGRVGCQWKGYIAFYKrENTWKFNVQ 95 8999**999998885778888999***999998777....899999*999888877779**** PP FAR1 82 eleHnH 87 + HnH FANhyb_icon00000871_a.1.g00001.1 96 RDFHNH 101 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-4	23	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-30	222	319	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MEEIIGVRID QMEDCKRAVE HLANENGFAT VIRRSTKKDP QTGIYLKIEL VCTRSRQPEL 60 KGSGKRRTPS GRVGCQWKGY IAFYKRENTW KFNVQRDFHN HYRVNAERIP VIRRHKRNGN 120 VEVLNQIRAL NNNRRLTAQD IAEEVGRQYS LEVTAKDVQN IRDEDQRALL GGRTPTQQFL 180 HNLQNDSSAL VVDFQTDAQN RVEYVLWTYQ WSIETWKNHN EVISLDDTYK TNRFNLPLMQ 240 ITGITGMNST FNVAWALIKD ERQTSYQWVL TRLQRIMDEH QIPLPMVIIT DYDTALRNAL 300 ETVFPRVPTQ LCLWHVMKNV VYNIGKKWEG TLEGTLLGER LGGVGTGIRR EGNHLEHEDA 360 NANAHAESVA THLMEGPERA VFGGNARPRI NINSVQQPGP GRSFVDSADG ILSAWRVCVY 420 AETEEMFTNN WRILEREFSD QRVKATSRTE GSHSSLKKHL KNRNGDLIAL NNAITTMREK 480 QERNYRNEME KQMHKVLPQH RSQLFNLVRC RVSFAALRML EDQANQAHNN SRMPLTVNWT 540 CSGVFTAQF

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MEEIIGVRID QMEDCKRAVE HLANENGFAT VIRRSTKKDP QTGIYLKIEL VCTRSRQPEL  60
KGSGKRRTPS GRVGCQWKGY IAFYKRENTW KFNVQRDFHN HYRVNAERIP VIRRHKRNGN  120
VEVLNQIRAL NNNRRLTAQD IAEEVGRQYS LEVTAKDVQN IRDEDQRALL GGRTPTQQFL  180
HNLQNDSSAL VVDFQTDAQN RVEYVLWTYQ WSIETWKNHN EVISLDDTYK TNRFNLPLMQ  240
ITGITGMNST FNVAWALIKD ERQTSYQWVL TRLQRIMDEH QIPLPMVIIT DYDTALRNAL  300
ETVFPRVPTQ LCLWHVMKNV VYNIGKKWEG TLEGTLLGER LGGVGTGIRR EGNHLEHEDA  360
NANAHAESVA THLMEGPERA VFGGNARPRI NINSVQQPGP GRSFVDSADG ILSAWRVCVY  420
AETEEMFTNN WRILEREFSD QRVKATSRTE GSHSSLKKHL KNRNGDLIAL NNAITTMREK  480
QERNYRNEME KQMHKVLPQH RSQLFNLVRC RVSFAALRML EDQANQAHNN SRMPLTVNWT  540
CSGVFTAQF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-19	FAR1-related sequence 5