PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000792_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 135aa MW: 14811.8 Da PI: 8.4917

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000792_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	68.5	1.4e-21	62	111	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l+ p FANhyb_icon00000792_a.1.g00001.1 62 PCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQVYP 111 7*********************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.256	61	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-20	62	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MECSTDTSFN TPNSTTYAPS TPFSHHSPSS SSRSSSPPIT PTQIPTQAQT QIPLPQNIVV 60 SPCAACKILR RRCAEKCVLA PYFPPSEPAK FTIAHRVFGA SNIIKFLQVY PSLQFNFSTQ 120 LVDWSEFQLG LGAYV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-17	61	114	10	63	LOB family transfactor Ramosa2.1
5ly0_B	6e-17	61	114	10	63	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294671.1	8e-50	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A2P6QHT3	5e-46	A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004294671.1	3e-49	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-32	LOB domain-containing protein 1