PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000648_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 270aa    MW: 30375.5 Da    PI: 6.0753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000648_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-164689247
                                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                      g  T+eE+ ++++++++lG++ W+ Ia++++ gRt++++k++w++ 
  FANhyb_icon00000648_a.1.g00001.1 46 GDYTEEEEAIIIKLHEKLGNR-WSMIAAKLP-GRTDNEIKNYWHTN 89
                                      568******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4261739IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-102552IPR009057Homeodomain-like
SuperFamilySSF466891.03E-212598IPR009057Homeodomain-like
PROSITE profilePS5129424.024094IPR017930Myb domain
SMARTSM007173.2E-164492IPR001005SANT/Myb domain
PfamPF002491.3E-144688IPR001005SANT/Myb domain
CDDcd001677.70E-134890No hitNo description
Gene3DG3DSA:1.10.10.604.5E-225390IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVRAPFYDKS GVKGHGILKK AISISRCGKS CRLRWKNYLQ PGVKHGDYTE EEEAIIIKLH  60
EKLGNRWSMI AAKLPGRTDN EIKNYWHTNM KKKRTKEQKN QPSSGQVVHP KDHHQHHDDH  120
EYSSRQNNSD DQIEAHETAT RNCNDACLQL LDPPILESSP AVSPESTVSS STSSAQYTSS  180
SSSSLNHEAR DSTVIMNYLI ADQDIVMVSS SETTISDQQY NAGDFWSTPF LQDSISIASD  240
IISSSSSYLL PYDEGMDLFY QVMPTQQDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2169318104MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295360.11e-135PREDICTED: transcription factor WER-like
TrEMBLA0A2P6S2Q31e-115A0A2P6S2Q3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004295360.11e-134(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.14e-36myb domain protein 66