PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000180_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CO-like
Protein Properties Length: 310aa    MW: 34148.9 Da    PI: 5.841
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000180_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.9e-06335436
                          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                                      r+C+ ++   +  +C+ +  +lC +C +e H+ 
  FANhyb_icon00000180_a.1.g00001.1  3 RICDFCSTSSAAVHCKADAAHLCLSCDSELHSA 35
                                      79******99*********************66 PP
2CCT33.71.4e-12275309135
                               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpR 35 
                                       R++a++RYk+K+++R +e+kirY+ +Ka+A+sR+R
  FANhyb_icon00000180_a.1.g00001.1 275 RANAMMRYKQKKHSRVYERKIRYQRKKAIADSRKR 309
                                       899*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.072147IPR000315B-box-type zinc finger
CDDcd000212.37E-4339No hitNo description
PROSITE profilePS5101710.695275310IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MARICDFCST SSAAVHCKAD AAHLCLSCDS ELHSANQVVN RHPRTILGDS CNYLSAYDGC  60
LDHGDGVLLC HLCDRSHRVT TSSPVHQRLT SNSYSYTGCP AAEDFAAVWG LQMNHDHTCT  120
TSHVGSLDIL GQILDLQRTQ STVPLGQCSN KTSQCPPSLT LHVDSDIEFS DKMQDQLRVS  180
DDDPHIPDDE YLAFLNLEEL IGDEDDQDLI VKTQQLLDDP NLDTAAASKD GRTESSSLPV  240
NGSSCSLPSS VSCNTFSSSS MVSQGVKGEQ VFDARANAMM RYKQKKHSRV YERKIRYQRK  300
KAIADSRKRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283299QKKHSRVYERKIRYQRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300952.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X2
RefseqXP_011464075.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1
TrEMBLA0A2P6R1F62e-77A0A2P6R1F6_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004300952.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-22B-box type zinc finger protein with CCT domain