PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00000113_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 367aa MW: 39984.8 Da PI: 6.7674 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.3e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Edell ++v+q+G ++W+ Iar ++ gR++k+c++rw + FANhyb_icon00000113_a.1.g00001.1 34 RGSWSPKEDELLTRLVTQFGARNWSVIARGIP-GRSGKSCRLRWCNQ 79 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 113 | 151 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ FANhyb_icon00000113_a.1.g00001.1 113 EEDRIIVAAHATHGNR-WSIIAKLLP-GRTDNAIKNHWNST 151 9***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.846 | 29 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 33 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 34 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 34 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.36E-27 | 34 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-14 | 36 | 78 | No hit | No description |
SMART | SM00717 | 4.7E-10 | 99 | 154 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.017 | 112 | 156 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 112 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-11 | 112 | 152 | No hit | No description |
Pfam | PF00249 | 1.3E-12 | 113 | 151 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.36E-27 | 124 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MTVPNDAAPP NPAEPGASPP HADEGGEIAA GKVRGSWSPK EDELLTRLVT QFGARNWSVI 60 ARGIPGRSGK SCRLRWCNQL NPGSDSCFCI CIVFVVHSVK KVWNVMECFG ADEEDRIIVA 120 AHATHGNRWS IIAKLLPGRT DNAIKNHWNS TLKRGRKYIP RTRNMKEDSG VERSKTSSEE 180 TVSVGNISSV RTPEGREVFI VDNSSNQNQD SVGVTELKDN STLVAELKED SALCRPVARV 240 SAFSAYNSSN GSVVPRPVPI PGPLVQTSKL NLDFCNSLEG DCNEPMVPLH CGHGCYDRRH 300 GHSGSSLLGP EFIDYEEPPS FSSPEFISCA TDVNNIAWIK SGLENRETIR VAENVASQRF 360 SQGALTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-32 | 33 | 154 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 33 | 154 | 3 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307600.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A2P6SKZ5 | 0.0 | A0A2P6SKZ5_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004307600.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 5e-76 | myb domain protein 109 |