PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02292.1.p
Common NameEUGRSUZ_K02292, LOC104425856
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 446aa    MW: 49545.6 Da    PI: 8.5924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-066082123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  Eucgr.K02292.1.p 60 YVCEICNQGFQRDQNLQMHRRRH 82
                      9*********************9 PP
2zf-C2H214.50.0001142164123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k +  +s++k H++t+
  Eucgr.K02292.1.p 142 WVCERCSKGYAVQSDYKAHLKTC 164
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-65982No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976082IPR007087Zinc finger, C2H2
PfamPF128740.0226078No hitNo description
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM0035587106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4129163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-6137162No hitNo description
SMARTSM00355100142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLGNANTSSS APFVPASSEP ENGNNSSSSN KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RENPAGQGAV ARKRVFVCPE PTCLHHDPRH  120
ALGDLVGIKK HYRRKHSNQK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDSC NMGRVRSELQ PLQPACLSRT ASSPTPSSDT NFSATPNLPP FILPKPMENP  240
ILLLSPTKDC SSRNGQDNHH HNLELQLSSS SIPAEAASIS SKSDEKDSTP LQLSIGSSCD  300
AREKNESNNV SHLMSNMGDR PNSVIAALQM REEAREQLRL AMAEKAYSEE TRELARRQIQ  360
MAEQEFANAQ RIRQQAQSEL DKALALREHA SKQINSAILQ VTCHACKKQF QARAVRDMAN  420
EDEKSSVLVL SYVSSVVTEG EVGER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17139191456Zinc finger protein JACKDAW
5b3h_F5e-17139191456Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02292.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036998.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-151IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A059A4G60.0A0A059A4G6_EUCGR; Uncharacterized protein
STRINGXP_010036998.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-145C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]