PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02241.1.p
Common NameEUGRSUZ_J02241, LOC104423906
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 347aa    MW: 38918.7 Da    PI: 8.5706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.3e-171352544
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       ++ r vt+ kRr+g+ KKA+E  +LC++++++ii++++g
  Eucgr.J02241.1.p 13 KERARRVTYEKRRKGLVKKAHEFTTLCGVDACMIIYGPEG 52
                      67889*********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.797152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-20298IPR002100Transcription factor, MADS-box
CDDcd002661.01E-22287No hitNo description
PRINTSPR004042.3E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRGKLALEL IPKERARRVT YEKRRKGLVK KAHEFTTLCG VDACMIIYGP EGSATAAEPM  60
VWPSSPEKVK LVIEQYRSEG ADRRAKRTVG LPEFFVNRKR KVDAELAKAR LANWKVKYPV  120
SEAPIEGLSE EDLRRLLGSL GHKLEAAKAR LAVMKEDAMR RSSGYVSDHH MHADDLVYHH  180
HMNGLFQNQI APMPMKQQPP PLDVNPLHLD LPYHMMQQQQ PLFDPEANSS ISMPSEWWGQ  240
RIQYPNHCLC GNVPPQQNFQ FTNLNLEGMM LSETSAYSPV LGNMSGSTPS FGACHNVPIV  300
QPAPPPAPLS VMQCDPIPTQ MMQASSQGNH QFHDYHVVLN KTIRES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02241.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034643.10.0PREDICTED: MADS-box protein GGM13
TrEMBLA0A059AH200.0A0A059AH20_EUCGR; Uncharacterized protein
STRINGXP_010034643.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16227914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-22M-type_MADS family protein