PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01123.1.p
Common NameEUGRSUZ_J01123, LOC104421817
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 229aa    MW: 24932.5 Da    PI: 6.2477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-42771761100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++
  Eucgr.J01123.1.p  77 PCAACKILRRRCVDKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSDLQEQ 169
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Eucgr.J01123.1.p 170 LAKTQAE 176
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.08776177IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-4377174IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEMEYKARTT TIPAPVTIPT KVFFPYSTSS SSSSPPPQPP SSQSSSPTTP PPHPPPPPSS  60
LPITPLPPPP PPAVLSPCAA CKILRRRCVD KCVLAPYFPP TEPYKFTIAH RVFGASNIIK  120
FLQELPEPQR ADAVSSMVYE ANARIRDPVY GCAGAICHLQ KQVSDLQEQL AKTQAELVNL  180
ELQRVNLVAA CMEMAQSQEP NINFQQQLAD STGFLEDGSA SWESIYWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-42691793113LOB family transfactor Ramosa2.1
5ly0_B5e-42691793113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01123.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032234.11e-165PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR03e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A059ACR71e-164A0A059ACR7_EUCGR; Uncharacterized protein
STRINGXP_010032234.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-74LOB domain-containing protein 1