PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01012.1.p
Common NameEUGRSUZ_J01012, LOC104421733
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 502aa    MW: 57504.4 Da    PI: 7.5928
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.3e-30117202187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Eucgr.J01012.1.p 117 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYNRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 202
                       8*************************************999*****************************97..66678*******85 PP
2trihelix64.72e-20415499486
          trihelix   4 kqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess.stcpyfdqle 86 
                       + e+l+Li++ +++e  +++ g l+++ We +s+km+  g++rs+ +C+ekwen+++ ++ki+e++kk++++ s s+  +f+ql+
  Eucgr.J01012.1.p 415 EPEILTLIQLITSLEPGFQEcGLLREGFWELISAKMACLGYNRSAGECQEKWENVRNSFRKITEWNKKQREDFSrSQNLFFHQLH 499
                       679****************9789*********************************************97665515667899997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.213110175IPR017877Myb-like domain
SMARTSM007170.0077114177IPR001005SANT/Myb domain
PfamPF138371.1E-20116203No hitNo description
CDDcd122034.04E-20116182No hitNo description
PROSITE profilePS500906.922405470IPR017877Myb-like domain
SMARTSM007170.0021409472IPR001005SANT/Myb domain
PfamPF138372.3E-14412499No hitNo description
CDDcd122033.14E-17414477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDEQYGLPDL RQLIATRTTQ FSSLLHLEPP LPPAPPPRTT IHTSFSPSSP PSSSHYEPTV  60
NMLSTALANT NAHSAHPFAT ATPPPSALTG AFDIFECGSY RSDMIGAAGT SGISSSRWPR  120
QETLTLLEIR SRLDPKFKEA NQKGPLWDEV SRIMSEEHGY NRSGKKCREK FENLYKYYKK  180
TKEGKAGRQD GKNYRFFRQL EAIYGESTTA NRKPSSDNSS LVSNINFYPA PNNISSHAFQ  240
DQALQREMSL SFSNSSSHEL ETASSSENNE EDLSAIAFMM NSSHSSEKKK RLVSESDSSK  300
RSKKGWKEKV KHFVDSQMRD IIEKQEAWME NMLKTIELKE QERVCREMEW KREETARFDC  360
ERELWAKQRV WIEARDTALM EALRKFTGQE LAILSPPKDR NIAKEEERNT SSFSEPEILT  420
LIQLITSLEP GFQECGLLRE GFWELISAKM ACLGYNRSAG ECQEKWENVR NSFRKITEWN  480
KKQREDFSRS QNLFFHQLHN S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032102.10.0PREDICTED: trihelix transcription factor PTL
TrEMBLA0A059ADP80.0A0A059ADP8_EUCGR; Uncharacterized protein
STRINGXP_010032102.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-98Trihelix family protein