PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00788.1.p
Common NameEUGRSUZ_J00788, LOC104421535
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 369aa    MW: 41130.8 Da    PI: 6.6393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00788.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-05202221120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Eucgr.J00788.1.p 202 FSCPLCFKTFNRYNNMQMHM 221
                       89*****************9 PP
2zf-C2H214.20.00013286308123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Eucgr.J00788.1.p 286 FMCRKCGKAFAVRGDWRTHEKNC 308
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5202221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SMARTSM00355310248281IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-6267306No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5282306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549286306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTDPYSSYLN GWINFNPLHH CSPSPPPPPS SSFSSIATNN YYNSSHCFYS LYDYNHVYSA  60
ASLPHASPPP SPPLKEALPL LSCLSPARHE EEEQASLSTP MEVENPSCQK DSFFPHNSAD  120
GADEDDDGDG EAVTVALHLG LPSPSSADLI SRLSSTEISS DKELDQETTV ASSGYFTSNN  180
KLNKGQYWIP TPAQILIGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRR GPESLRGTQP  240
TAMLRLPCYC CAPGCKNNID HPRSKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD  300
WRTHEKNCGK LWYCSCGSDF KHKRSLKDHI RAFGSGHTAY GIEDDCGFEE EEAATSEIEQ  360
DNNFECSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00788.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031820.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A059ABH90.0A0A059ABH9_EUCGR; Uncharacterized protein
STRINGXP_010031820.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]