PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02506.1.p | ||||||||
Common Name | EUGRSUZ_I02506, LOC104420808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24522.7 Da PI: 8.2489 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.2 | 1.8e-22 | 16 | 60 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +n+sn qvtfskRr g++KKA+ELS+LC+a+va+i+fs+ k + Eucgr.I02506.1.p 16 MDNESNLQVTFSKRRSGLFKKASELSTLCGADVALIVFSPGEKAF 60 68*************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.516 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-27 | 7 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.31E-36 | 7 | 79 | No hit | No description |
PRINTS | PR00404 | 1.8E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MARTTRGRQR IQMAKMDNES NLQVTFSKRR SGLFKKASEL STLCGADVAL IVFSPGEKAF 60 SFGHPNVDTV LDRFLNGNEL PQQTAGTAQL IEAHRNATIC ELNVQLTEVL GQLEMEKKRG 120 EELKKAVRTN QESHWWERPV DELSVPQLEQ LKISLFELRK NVSKETEQMV IQATNTQPFF 180 GASSSHGPPI PFQSQNGTSA PVMPPNPHQY NFGFGSGYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-19 | 7 | 93 | 1 | 86 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02506.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030890.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 4e-64 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059ASL0 | 1e-162 | A0A059ASL0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030890.1 | 1e-163 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-66 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02506.1.p |
Entrez Gene | 104420808 |
Publications ? help Back to Top | |||
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