PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01934.1.p | ||||||||
Common Name | EUGRSUZ_I01934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27035.2 Da PI: 8.5187 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.4e-18 | 87 | 138 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Eucgr.I01934.1.p 87 KRLSLEQVKALEKSFEIGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 138 45889**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 2.9e-41 | 84 | 174 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+k+rls eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lk++++ lk+en++L++++e+L++el Eucgr.I01934.1.p 84 ERKKRLSLEQVKALEKSFEIGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEVLKAENDALHAQNEKLHAEL 174 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 61 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-18 | 83 | 144 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.568 | 84 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-19 | 84 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.57E-15 | 85 | 141 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 86 | 138 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.2E-5 | 111 | 120 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 120 | 136 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-14 | 140 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAFPPPSASS AASFMFQAHH HHHQEDPLPS IIPLNHSNGD VVNNVPFLMK RSMSFSGADH 60 NQRSCGGGDD DDLSDDGSQL LLGERKKRLS LEQVKALEKS FEIGNKLEPE RKIQLARALG 120 LQPRQIAIWF QNRRARWKTK QLERDYEVLK KQFEVLKAEN DALHAQNEKL HAELLVLKGR 180 DTNEAPSNLK KEIERSYWSN GSENSSDINL DISRTSVMNS PVSSSQFSNK HHFTSSRPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01934.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029293.1 | 1e-176 | PREDICTED: homeobox-leucine zipper protein ATHB-20 | ||||
Swissprot | Q8LAT0 | 1e-71 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A0A059AQY5 | 1e-176 | A0A059AQY5_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010029293.1 | 1e-175 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 3e-60 | homeobox protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01934.1.p |