PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00569.1.p | ||||||||
Common Name | EUGRSUZ_I00569, LOC104418343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 379aa MW: 39731.9 Da PI: 9.1612 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.5e-39 | 39 | 98 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprCds+ntkfCyynnysl+qPr+fCk+CrryWtk GalrnvP+Ggg+rknkk Eucgr.I00569.1.p 39 PEQALKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTKNGALRNVPIGGGCRKNKKL 98 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-27 | 38 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MTPPGTAPPK PPPMAGKEEA APSSGSRKAA SSSSSGKQPE QALKCPRCDS SNTKFCYYNN 60 YSLTQPRHFC KTCRRYWTKN GALRNVPIGG GCRKNKKLKP SSASSRLFPG GGGDPKEYYS 120 MAAAPPHPEL GGFKLFHGLA PAVDFQLGGL SNFSKAVQNH NPPAPGIYSQ FSSFSDASAI 180 ETAAAAPTSA ATCFSLDQMA GPSGTILGFN NYHALPPFIA AAPGFGTSGA LHEPGGSMKV 240 DSNLASSIES LSSINQDLHW KLQQQRLAML FSGDNNNNHN PKANNSGDVA ASSINIATAP 300 FEDQSQNLRQ PVLFQNLDAA GSSRKEGSSV TEWFFGNAYA SVTTPSPTNS SSNGNDNNNA 360 GNWNSKGPGQ GFQYTALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00569.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099043 | 4e-49 | AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence. | |||
GenBank | AK063380 | 4e-49 | AK063380.1 Oryza sativa Japonica Group cDNA clone:001-114-F11, full insert sequence. | |||
GenBank | AM084363 | 4e-49 | AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15. | |||
GenBank | AP004791 | 4e-49 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014959 | 4e-49 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014962 | 4e-49 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-49 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027969.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A059AKU6 | 0.0 | A0A059AKU6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027969.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 4e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00569.1.p |
Entrez Gene | 104418343 |