PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04824.1.p
Common NameEUGRSUZ_H04824, LOC104415815
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 363aa    MW: 41119.5 Da    PI: 7.3014
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04824.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.7e-1277107434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                       +k++rr+++NReAAr+sR+RKka++++Le  
  Eucgr.H04824.1.p  77 DKVQRRLAQNREAARKSRLRKKAYVQQLEAS 107
                       89**************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-871123No hitNo description
SMARTSM003381.7E-674134IPR004827Basic-leucine zipper domain
PfamPF001701.9E-877107IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-778120No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141441.3E-30164239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSTTTQFVS SRRMGMYDPI HQIGMWDENF KQNGNPNAPP ALIIPMHANL DNQSEDTSHG  60
SQDTAGKYEQ ETSKPYDKVQ RRLAQNREAA RKSRLRKKAY VQQLEASRLK LVQLEQEVDR  120
ARQQGVYMAS GVDSAYPGYG GCLNSGIVAF EMEYGHWIDE QNRQICELRA ALNDHRTDVE  180
LRILVESGMN HYLELFRMKA VASKADVFYV MSGMWRTSSE RFFLWIGGFR PSELLKVLMP  240
QLDPLSDQQW AFVSNLRQAC QQAEDALKQG LDKLQLNLAE AVASGHLGEG NYIPQVATAL  300
EKLEALVSFV NQADHLRQET LLQMSNHLTT RQAARGLLAL GEYFQRLRAL SNLWATRPRE  360
PA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04824.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025492.10.0PREDICTED: transcription factor TGA4
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A059B7Z90.0A0A059B7Z9_EUCGR; Uncharacterized protein
STRINGXP_010025492.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]