PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04035.1.p
Common NameEUGRSUZ_H04035
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CAMTA
Protein Properties Length: 603aa    MW: 67843.6 Da    PI: 6.2074
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.68.4e-52301463118
              CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       +e k+rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf
  Eucgr.H04035.1.p  30 EEaKTRWLRPNEIHAMLCNYKYFSILVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTF 122
                       5559***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylevk 118
                        rrcywlL+++le+ivlvhy+e++
  Eucgr.H04035.1.p 123 VRRCYWLLDKTLEHIVLVHYRETQ 146
                       *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.04825151IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-4631144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.8E-4338443IPR013783Immunoglobulin-like fold
PfamPF018331.4E-4353439IPR002909IPT domain
SuperFamilySSF812963.01E-15353440IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-5543601IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-4547601IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.561556602IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MENSLQGMLV GSEIHGFRTL RDLEVDTMWE EAKTRWLRPN EIHAMLCNYK YFSILVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQESQG SPATPVNSHS SSVSDPSAPW VLSEELDSGT  180
NQAYYSAEKG RAEPGDTLTV RNHEMRLLEL NTLEWDELVT DDPNNLSASK GAPDGISCFE  240
RQNTAESIAI NNGVLSPGVC HLDKLNDVVS TMGIQANSNP SRSDYIPISS PGFFGNDGLQ  300
SQDSFGRWMN YIMTETPDSA HDAALESSIS SCHFGPSSVA MNDQPSSPEI IFTITDVAPA  360
WAFSTEKTKI LITGIFHEGY LQHSKSNMSC ICGDFSVPAE LVQVGVYRCF VTPHTPGLVN  420
LCLSFDGYKP ISQVIQFEYR TPPLHDPVPS NEDRSERERL ELQMRLAFLL FSSPKYLDIA  480
SSKASTTAQK EAKKFVQKTS NISKDWAYLL SSVEDDKMSL PHAKSTLFEL LLKNRLKDWI  540
LERVIAGGKM TEYDMHGQGV IHLCAILEYS WAINMFALSP FSLDFRDRSG WTALHWAANC  600
GR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04035.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081392e-33AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024780.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A059B6I70.0A0A059B6I7_EUCGR; Uncharacterized protein
STRINGXP_010024780.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]