PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02495.1.p
Common NameEUGRSUZ_H02495
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 304aa    MW: 32818.7 Da    PI: 6.9088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02495.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-172069255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Eucgr.H02495.1.p 20 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 69
                      59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.6E-342083IPR001471AP2/ERF domain
PfamPF008476.9E-112069IPR001471AP2/ERF domain
CDDcd000183.37E-292076No hitNo description
SuperFamilySSF541712.81E-212077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-292076IPR001471AP2/ERF domain
PROSITE profilePS5103222.0892077IPR001471AP2/ERF domain
PRINTSPR003671.5E-92132IPR001471AP2/ERF domain
PRINTSPR003671.5E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
GKRALRDGGG GGGGSGVTMR YRGVRRRPWG RYAAEIRDPQ SKERRWLGTF DTAEEAACAY  60
DCAARAMRGV KARTNFVYPT NPPPLSDHHH HHHFLHNPVP FPPKPYSRDL AGITTRGTVL  120
AASPVAQPPR NAASLDVSLF LRDILNPPNT APLYPPPPPP QLPSLTSFAQ PPSLHVPNEY  180
QKPQAEQNED DDPCGFFLEE SPESGLLEEV IQGFFPRKKK SSDQAKGQLW NDGPHGPGAV  240
TSPRDQMQGL NGLTSLHLQT YSCGGGGGDS DDLVGVPAAV PLDVDVLQYP EFLGTFAARV  300
HDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191381476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02495.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9804501e-36KM980450.1 Betula platyphylla ethylene response factor protein 6 (ERF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026637.10.0PREDICTED: ethylene-responsive transcription factor ESR2
TrEMBLA0A059B0H90.0A0A059B0H9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010026637.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-13DORNROSCHEN-like