PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02387.1.p
Common NameEUGRSUZ_H02387
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 350aa    MW: 39303.8 Da    PI: 8.2278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02387.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11173216755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er+RR++i + f  L  ++P++     kK++Ka+iLe+A++Y k+Lq
  Eucgr.H02387.1.p 173 LAERKRREKISKLFIALSAVIPNL-----KKMDKASILEEAIRYSKELQ 216
                       68**********************.....9**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15171230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9173216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.39E-12173220No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAEDAAYFHH HQPQQQQQQQ QRQQQQSSSF SLDDELDLFH PHFPSERCSN SSTSHLLPLI  60
SPETMPGFVP QFVETPQEFA KRPWKQLETE SWISPRTTEH KTMARNVVIS PSLSPSRPPE  120
SHFMSFGNPN SSPAISYPFY GKVLQETEAL SEPKMKSAGA TSRKPVYTQE NVLAERKRRE  180
KISKLFIALS AVIPNLKKMD KASILEEAIR YSKELQQRVE ALEEEVAAKT VESVVVAKKP  240
RLTMYDDTSS SSNEKSCGHL NRQLSLPDIE ARISGKCVLI KVHCEKRKGL ISKIIGQTEK  300
LNLIVVSSCV LPFGSSTQDV TILAQVDEGF SLKMGDLVRN LRQALLDLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02387.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023398.10.0PREDICTED: transcription factor bHLH18
TrEMBLA0A059B0750.0A0A059B075_EUCGR; Uncharacterized protein
STRINGXP_010023398.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-49bHLH family protein