PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02385.1.p
Common NameEUGRSUZ_H02385
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 219aa    MW: 23978.6 Da    PI: 6.2794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02385.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-1464110455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er+RR++i ++f  L  ++P++      K++Ka+iLe A++Y+k+Lq
  Eucgr.H02385.1.p  64 EHVLAERKRREKISERFIALSAVIPNL-----SKMDKASILEDAIKYLKELQ 110
                       6899**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1859122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.53960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1964121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1164110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-1565114No hitNo description
SMARTSM003534.0E-1666115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTCNAAMLPA PSPSPDSRLI SFGNPDSSPA ISDRLYGTFE VQDCEGPKMK SASPMSRTPA  60
HAQEHVLAER KRREKISERF IALSAVIPNL SKMDKASILE DAIKYLKELQ QRVKALEEEV  120
ATKTVESVIV VKKSELAAAD NMSSLSDGNS CNQIDQQLSL PEIEARVSGK CVLIKIHCEK  180
RNGFISKLIG EIEKLNLTVE NSCVMPFGSS FLDVTILAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1565119963Transcription factor MYC2
5gnj_B5e-1565119963Transcription factor MYC2
5gnj_E5e-1565119963Transcription factor MYC2
5gnj_F5e-1565119963Transcription factor MYC2
5gnj_G5e-1565119963Transcription factor MYC2
5gnj_I5e-1565119963Transcription factor MYC2
5gnj_M5e-1565119963Transcription factor MYC2
5gnj_N5e-1565119963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERKRRE
26974RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02385.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023396.11e-158PREDICTED: transcription factor bHLH18
SwissprotQ9T0722e-51BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059B1T71e-158A0A059B1T7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023396.11e-157(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-54bHLH family protein